RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA432257" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA432257 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1088787 1088787 PRJNA432257_S_NODE_58061_length_218_cov_99.546961_g57680_i0 PRJNA432257 58061 218 99.546961 217.01237498 Bacteria 2 Bacteria Bacteria 200 6.4999999999999985e-47   NTclustered gi|2874253690|emb|OY969416.1| 412056 g57680 i0 86.885 54.1651376146789 183 19 83 3 1 182 1315121 1314943 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 11808 202 0.99009900990099 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
5533761 5533761 PRJNA432257_S_NODE_70945_length_202_cov_27.854545_g70564_i0 PRJNA432257 70945 202 27.854545 56.2661809 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 62.1 2.92e-5   NTclustered gi|2874254020|emb|OY970345.1| 412056 g70564 i0 97.222 0.534653465346535 36 1 18 0 46 81 2784658 2784693 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 blastn 108 62.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
10016958 10016958 PRJNA432257_S_NODE_73128_length_200_cov_1.914110_g72747_i0 PRJNA432257 73128 200 1.91411 3.82822 Luteolibacter 518753 Bacteria Bacteria 148 2.15e-31   NTclustered gi|256692927|gb|GQ406199.1| 100234 g72747 i0 100 91.355 80 0 40 0 121 200 2011 1932 Uncultured Verrucomicrobiales bacterium clone BK-45-28 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 18271 148 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     uncultured Verrucomicrobiales bacterium
10633146 10633146 PRJNA432257_S_NODE_14249_length_361_cov_15.978395_g13868_i0 PRJNA432257 14249 361 15.978395 57.68200595 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 459 1.7299999999999999e-124   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g13868 i0 91.818 154.382271468144 330 25 91 2 1 329 4718684 4719012 Luteolibacter sp. SL250 chromosome blastn 55732 459 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
14458657 14458657 PRJNA432257_S_NODE_51892_length_228_cov_1.680628_g51511_i0 PRJNA432257 51892 228 1.680628 3.83183184 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 383 6.35e-102   NTclustered gi|226525288|gb|FJ872373.1| 156588 g51511 i0 97.333 524.19298245614 225 6 99 0 4 228 16814 16590 Uncultured Verrucomicrobia bacterium clone 118 genomic sequence blastn 119516 383 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
17666421 17666421 PRJNA432257_S_NODE_67054_length_207_cov_1.147059_g66673_i0 PRJNA432257 67054 207 1.147059 2.37441213 Verrucomicrobium 2735 Bacteria Bacteria 206 1.3099999999999999e-48   NTclustered gi|2874253793|emb|OY969777.1| 412056 g66673 i0 85.641 87.1159420289855 195 28 94 0 12 206 315958 315764 MAG: uncultured Verrucomicrobiae bacterium isolate MFD01689.bin.c.1 genome assembly, chromosome: 1 blastn 18033 206 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
19556267 19556267 PRJNA432257_S_NODE_96596_length_179_cov_1.880282_g96215_i0 PRJNA432257 96596 179 1.880282 3.36570478 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 111 2.47e-20   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g96215 i0 94.521 2.49162011173184 73 3 41 1 1 73 5510 5581 Luteolibacter sp. SL250 chromosome blastn 446 111 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;