contig_metadata
8 rows where analysis = "blastn", bioproject = "PRJNA432257" and tax_phylum = "Spirochaetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1704772 | 1704772 | PRJNA432257_S_NODE_5962_length_492_cov_3.973626_g5683_i0 | PRJNA432257 | 5962 | 492 | 3.973626 | 19.55023992 | Treponema putidum | 221027 | Bacteria | Bacteria | 654 | 0 | NTclustered | gi|2277015157|gb|CP038803.1| | 221027 | g5683 | i0 | 93.096 | 3.88617886178862 | 449 | 28 | 91 | 3 | 1 | 447 | 1188583 | 1188136 | Treponema putidum strain OMZ 846 chromosome, complete genome | blastn | 1912 | 654 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema putidum | ||
| 6807712 | 6807712 | PRJNA432257_S_NODE_67626_length_206_cov_3.449704_g67245_i0 | PRJNA432257 | 67626 | 206 | 3.449704 | 7.10639024 | Treponema parvum | 138851 | Bacteria | Bacteria | 52.8 | 0.018 | NTclustered | gi|2023447176|gb|CP054142.1| | 138851 | g67245 | i0 | 100 | 0.135922330097087 | 28 | 0 | 14 | 0 | 149 | 176 | 1050613 | 1050586 | Treponema parvum strain ATCC 700770 chromosome, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema parvum | ||
| 13183253 | 13183253 | PRJNA432257_S_NODE_3531_length_594_cov_3.265709_g3322_i0 | PRJNA432257 | 3531 | 594 | 3.265709 | 19.39831146 | Treponema denticola | 158 | Bacteria | Bacteria | 959 | 0 | NTclustered | gi|2265172126|gb|CP051522.1| | 158 | g3322 | i0 | 95.791 | 7.0959595959596 | 594 | 25 | 100 | 0 | 1 | 594 | 1672368 | 1671775 | Treponema denticola strain OMZ 910 chromosome, complete genome | blastn | 4215 | 959 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 13842159 | 13842159 | PRJNA432257_S_NODE_25451_length_296_cov_4.671815_g25070_i0 | PRJNA432257 | 25451 | 296 | 4.671815 | 13.8285724 | Treponema | 157 | Bacteria | Bacteria | 520 | 6.2699999999999985e-143 | NTclustered | gi|2265172126|gb|CP051522.1| | 158 | g25070 | i0 | 98.639 | 4.99324324324324 | 294 | 3 | 99 | 1 | 1 | 293 | 1672355 | 1672648 | Treponema denticola strain OMZ 910 chromosome, complete genome | blastn | 1478 | 520 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 15731702 | 15731702 | PRJNA432257_S_NODE_112793_length_163_cov_2.865079_g112412_i0 | PRJNA432257 | 112793 | 163 | 2.865079 | 4.67007877 | Borreliella garinii | 29519 | Bacteria | Bacteria | 52.8 | 0.014 | NTclustered | gi|2371381440|gb|CP075234.1| | 29519 | g112412 | i0 | 94.286 | 0.429447852760736 | 35 | 0 | 20 | 2 | 29 | 61 | 773757 | 773791 | Borreliella garinii strain JAASAAF1012 chromosome, complete genome | blastn | 70 | 52.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Borreliaceae | Borreliella | Borreliella garinii | ||
| 19555737 | 19555737 | PRJNA432257_S_NODE_556_length_1583_cov_10.401682_g526_i0 | PRJNA432257 | 556 | 1583 | 10.401682 | 164.65862606 | Treponema denticola | 158 | Bacteria | Bacteria | 2261 | 0 | NTclustered | gi|2323013626|gb|CP109619.1| | 158 | g526 | i0 | 93.115 | 9.76563487049905 | 1554 | 89 | 98 | 15 | 1 | 1547 | 1322436 | 1320894 | Treponema denticola strain KCOM 3500 chromosome, complete genome | blastn | 15459 | 2261 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 21490718 | 21490718 | PRJNA432257_S_NODE_92237_length_182_cov_11.137931_g91856_i0 | PRJNA432257 | 92237 | 182 | 11.137931 | 20.27103442 | Gracilinema | 2951106 | Bacteria | Bacteria | 195 | 2.43e-45 | NTclustered | gi|470488994|ref|NR_076899.1| | 215591 | g91856 | i0 | 89.241 | 164.835164835165 | 158 | 13 | 86 | 3 | 27 | 182 | 2311 | 2466 | Treponema caldarium strain H1 23S ribosomal RNA, complete sequence | blastn | 30000 | 195 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Breznakiellaceae | Gracilinema | Gracilinema caldarium | ||
| 24656040 | 24656040 | PRJNA432257_S_NODE_45080_length_240_cov_3.266010_g44699_i0 | PRJNA432257 | 45080 | 240 | 3.26601 | 7.838424 | Treponema putidum | 221027 | Bacteria | Bacteria | 383 | 6.74e-102 | NTclustered | gi|2277015157|gb|CP038803.1| | 221027 | g44699 | i0 | 95.417 | 6 | 240 | 11 | 100 | 0 | 1 | 240 | 1188558 | 1188797 | Treponema putidum strain OMZ 846 chromosome, complete genome | blastn | 1440 | 383 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema putidum |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;