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contig_metadata

32 rows where analysis = "blastn", bioproject = "PRJNA432257" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 32 ✖

tax_clade 1

bioproject 1

  • PRJNA432257 · 32 ✖

analysis 1

  • blastn · 32 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
429025 429025 PRJNA432257_S_NODE_109361_length_167_cov_1.800000_g108980_i0 PRJNA432257 109361 167 1.8 3.006 Bremia lactucae 4779 SAR_Eukaryotes SAR_Eukaryotes 143 8.08e-30   NTclustered gi|2794738571|ref|XM_067960032.1| 4779 g108980 i0 84.247 18.5868263473054 146 23 87 0 1 146 170 25 Bremia lactucae uncharacterized protein (CCR75_001931), mRNA blastn 3104 143 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
1704290 1704290 PRJNA432257_S_NODE_25542_length_295_cov_342.251938_g25161_i0 PRJNA432257 25542 295 342.251938 1009.6432171 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 169 2.6099999999999996e-37   NTclustered gi|813184937|ref|XM_012351251.1| 695850 g25161 i0 86.364 28.9762711864407 154 21 52 0 7 160 312 159 Saprolegnia parasitica CBS 223.65 40S ribosomal protein S14 mRNA blastn 8548 169 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
1704661 1704661 PRJNA432257_S_NODE_50722_length_230_cov_1.818653_g50341_i0 PRJNA432257 50722 230 1.818653 4.1829019 Globisporangium sylvaticum 82950 SAR_Eukaryotes SAR_Eukaryotes 110 1.2e-19   NTclustered gi|1780534025|gb|MK752998.1| 82950 g50341 i0 95.588 7.27826086956522 68 3 30 0 163 230 1341 1274 Pythium sylvaticum isolate NESO_2-13 beta-tubulin mRNA, complete cds blastn 1674 110 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium sylvaticum
2363997 2363997 PRJNA432257_S_NODE_112322_length_164_cov_1.448819_g111941_i0 PRJNA432257 112322 164 1.448819 2.37606316 Peronospora 70742 SAR_Eukaryotes SAR_Eukaryotes 292 7.41e-75   NTclustered gi|1663822451|gb|MH730823.1| 162094 g111941 i0 98.78 100 164 2 100 0 1 164 705 542 Peronospora hiemalis voucher GLM75690 28S ribosomal RNA gene, partial sequence blastn 16400 292 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora hiemalis
5533091 5533091 PRJNA432257_S_NODE_23445_length_305_cov_2.268657_g23064_i0 PRJNA432257 23445 305 2.268657 6.91940385 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 305 1.98e-78   NTclustered gi|695372547|ref|XM_009516544.1| 67593 g23064 i0 93.237 4.11147540983607 207 14 68 0 1 207 71 277 Phytophthora sojae hypothetical protein mRNA blastn 1254 305 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
6191808 6191808 PRJNA432257_S_NODE_50145_length_231_cov_1.809278_g49764_i0 PRJNA432257 50145 231 1.809278 4.17943218 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 204 5.3799999999999997e-48   NTclustered gi|66270184|gb|AY961476.1| 4787 g49764 i0 84.615 4.54545454545455 208 28 89 4 27 231 391 185 Phytophthora infestans clone MY-08-A-03 ribosomal protein L35 mRNA, complete cds blastn 1050 204 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
6191824 6191824 PRJNA432257_S_NODE_54305_length_224_cov_2.497326_g53924_i0 PRJNA432257 54305 224 2.497326 5.59401024 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 268 1.82e-67   NTclustered gi|2248513076|ref|NC_063796.1| 4786 g53924 i0 92.347 80.4151785714286 196 3 88 7 1 196 15462 15645 Phytophthora cryptogea culture CBS:418.71 mitochondrion, complete genome blastn 18013 270 0.992592592592593 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cryptogea
6807964 6807964 PRJNA432257_S_NODE_89006_length_185_cov_1.844595_g88625_i0 PRJNA432257 89006 185 1.844595 3.41250075 Phytophthora cryptogea 4786 SAR_Eukaryotes SAR_Eukaryotes 193 8.919999999999999e-45   NTclustered gi|2248513076|ref|NC_063796.1| 4786 g88625 i0 85.484 71.3567567567568 186 25 100 2 1 185 28284 28100 Phytophthora cryptogea culture CBS:418.71 mitochondrion, complete genome blastn 13201 193 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cryptogea
9357086 9357086 PRJNA432257_S_NODE_102628_length_174_cov_1.963504_g102247_i0 PRJNA432257 102628 174 1.963504 3.41649696 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 148 1.8099999999999999e-31   NTclustered gi|698783776|ref|XM_009826630.1| 112090 g102247 i0 85.714 0.804597701149425 140 20 80 0 24 163 1728 1589 Aphanomyces astaci aspartate-tRNA(Asn) ligase mRNA blastn 140 148 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
9357561 9357561 PRJNA432257_S_NODE_2548_length_677_cov_3.370312_g2389_i0 PRJNA432257 2548 677 3.370312 22.81701224 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 235 6.24e-57   NTclustered gi|698825318|ref|XM_009847386.1| 112090 g2389 i0 83.594 2.87296898079764 256 37 38 5 1 255 908 1159 Aphanomyces astaci hypothetical protein mRNA blastn 1945 235 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
10633413 10633413 PRJNA432257_S_NODE_3169_length_618_cov_57.168675_g2973_i0 PRJNA432257 3169 618 57.168675 353.3024115 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 117 2.14e-21   NTclustered gi|325195998|emb|FR826788.1| 890382 g2973 i0 89.247 0.150485436893204 93 10 15 0 19 111 93 1 Albugo laibachii Nc14, genomic contig CONTIG_3955_NC14_v4_288_63 blastn 93 117 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
10633711 10633711 PRJNA432257_S_NODE_53849_length_225_cov_1.037234_g53468_i0 PRJNA432257 53849 225 1.037234 2.3337765 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 134 6.95e-27   NTclustered gi|813177544|ref|XM_012349852.1| 695850 g53468 i0 88.889 1.68 108 12 48 0 1 108 1018 1125 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 378 134 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
11908154 11908154 PRJNA432257_S_NODE_23630_length_304_cov_5.127341_g23249_i0 PRJNA432257 23630 304 5.127341 15.58711664 Chlamydomyzium anomalum 1702224 SAR_Eukaryotes SAR_Eukaryotes 278 4.2900000000000005e-70   NTclustered gi|918464330|gb|KT257478.1| 1702224 g23249 i0 83.544 103.207236842105 316 32 100 18 1 304 15 322 Chlamydomyzium anomalum isolate LEV5867 28S ribosomal RNA gene, partial sequence blastn 31375 278 1 Eukaryota Sar   Oomycota   Myzocytiopsidales Myzocytiopsidaceae Chlamydomyzium Chlamydomyzium anomalum
11908961 11908961 PRJNA432257_S_NODE_80970_length_192_cov_2.264516_g80589_i0 PRJNA432257 80970 192 2.264516 4.34787072 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 204 4.31e-48   NTclustered gi|695413367|ref|XM_009527718.1| 67593 g80589 i0 88.623 82.8125 167 19 87 0 2 168 535 369 Phytophthora sojae hypothetical protein partial mRNA blastn 15900 204 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
12567547 12567547 PRJNA432257_S_NODE_3690_length_585_cov_22.027372_g3473_i0 PRJNA432257 3690 585 22.027372 128.8601262 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 488 3.72e-133   NTclustered gi|2795061008|ref|XM_067940276.1| 4785 g3473 i0 87.179 14.7401709401709 429 55 73 0 121 549 447 19 Phytophthora cinnamomi 60S ribosomal protein L23a (IUM83_15460), partial mRNA blastn 8623 488 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
12567599 12567599 PRJNA432257_S_NODE_51190_length_229_cov_2.447917_g50809_i0 PRJNA432257 51190 229 2.447917 5.60572993 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 230 8.79e-56   NTclustered gi|695466988|ref|XM_009541231.1| 67593 g50809 i0 84.783 14.0218340611354 230 33 100 2 1 229 873 645 Phytophthora sojae hypothetical protein mRNA blastn 3211 230 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
13182992 13182992 PRJNA432257_S_NODE_1571_length_828_cov_127.546144_g1461_i0 PRJNA432257 1571 828 127.546144 1056.08207232 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 370 2.02e-97   NTclustered gi|2795048588|ref|XM_067932045.1| 4785 g1461 i0 77.726 69.1992753623188 642 117 76 21 134 762 629 1 Phytophthora cinnamomi 40S ribosomal protein S6 (IUM83_07725), partial mRNA blastn 57297 370 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
14458100 14458100 PRJNA432257_S_NODE_1412_length_867_cov_26.634940_g1307_i0 PRJNA432257 1412 867 26.63494 230.9249298 Phytophthora aleatoria 2496075 SAR_Eukaryotes SAR_Eukaryotes 651 0   NTclustered gi|2248513721|ref|NC_063812.1| 2496075 g1307 i0 82.383 90.0888119953864 772 113 88 22 106 867 102 860 Phytophthora aleatoria culture NZFS:4037 mitochondrion, complete genome blastn 78107 651 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora aleatoria
17006848 17006848 PRJNA432257_S_NODE_34714_length_265_cov_1.986842_g34333_i0 PRJNA432257 34714 265 1.986842 5.2651313 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 241 4.82e-59   NTclustered gi|2795040529|ref|XM_067944818.1| 4785 g34333 i0 83.206 16.2075471698113 262 44 99 0 2 263 380 119 Phytophthora cinnamomi 60S ribosomal protein L23 (IUM83_19754), partial mRNA blastn 4295 241 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
17666390 17666390 PRJNA432257_S_NODE_58314_length_218_cov_4.878453_g57933_i0 PRJNA432257 58314 218 4.878453 10.63502754 root 1 Root_unresolved Root_unresolved 361 2.82e-95   NTclustered gi|166046796|emb|CU367371.1| 100861 g57933 i0 99.495 7.36238532110092 198 1 91 0 4 201 489 292 Aphanomyces euteiches cDNA blastn 1605 361 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
18281814 18281814 PRJNA432257_S_NODE_83335_length_190_cov_1.588235_g82954_i0 PRJNA432257 83335 190 1.588235 3.0176465 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 122 1.2299999999999997e-23   NTclustered gi|813157874|ref|XM_012346896.1| 695850 g82954 i0 84.677 7.64736842105263 124 17 65 2 22 144 235 357 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 1453 122 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
22106053 22106053 PRJNA432257_S_NODE_29138_length_282_cov_4.889796_g28757_i0 PRJNA432257 29138 282 4.889796 13.78922472 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 110 1.52e-19   NTclustered gi|675213398|ref|XM_008917336.1| 761204 g28757 i0 92.208 0.468085106382979 77 6 27 0 192 268 1084 1160 Phytophthora parasitica INRA-310 ribosomal protein S2 mRNA blastn 132 110 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
22765805 22765805 PRJNA432257_S_NODE_79338_length_193_cov_134.717949_g78957_i0 PRJNA432257 79338 193 134.717949 260.00564157 root 1 Root_unresolved Root_unresolved 287 4.189999999999999e-73   NTclustered gi|166046503|emb|CU367620.1| 100861 g78957 i0 100 8.89637305699482 155 0 80 0 7 161 714 868 Aphanomyces euteiches cDNA blastn 1717 287 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
23381969 23381969 PRJNA432257_S_NODE_5179_length_516_cov_264.298539_g4916_i0 PRJNA432257 5179 516 264.298539 1363.78046124 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 333 1.61e-86   NTclustered gi|2794914530|ref|XM_067892428.1| 164328 g4916 i0 83.198 72.3604651162791 369 57 71 5 55 421 4092 3727 Phytophthora ramorum Serine/threonine-protein phosphatase 5 (KRP23_7150), partial mRNA blastn 37338 333 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
24040458 24040458 PRJNA432257_S_NODE_26959_length_290_cov_3.699605_g26578_i0 PRJNA432257 26959 290 3.699605 10.7288545 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 359 1.4099999999999998e-94   NTclustered gi|2308292368|gb|OK574295.1| 29920 g26578 i0 91.255 74.3827586206897 263 23 91 0 1 263 11908 12170 Phytophthora cactorum voucher CH9812411 mitochondrion, complete genome blastn 21571 359 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
24040685 24040685 PRJNA432257_S_NODE_84519_length_189_cov_1.263158_g84138_i0 PRJNA432257 84519 189 1.263158 2.38736862 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 91.6 3.44e-14   NTclustered gi|50261276|ref|NC_005984.1| 4770 g84138 i0 79.688 55.5873015873016 128 25 67 1 6 132 9321 9448 Saprolegnia ferax mitochondrion, complete genome blastn 10506 91.6 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax
24040702 24040702 PRJNA432257_S_NODE_91099_length_183_cov_6.684932_g90718_i0 PRJNA432257 91099 183 6.684932 12.23342556 Hyaloperonospora 184462 SAR_Eukaryotes SAR_Eukaryotes 278 2.36e-70   NTclustered gi|158519309|gb|EU054869.1| 123356 g90718 i0 100 82.6284153005465 150 0 82 0 34 183 126 275 Hyaloperonospora parasitica strain J661/01 (TUB 12425) large subunit ribosomal RNA gene, partial sequence blastn 15121 278 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
24655359 24655359 PRJNA432257_S_NODE_108800_length_168_cov_1.129771_g108419_i0 PRJNA432257 108800 168 1.129771 1.89801528 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 243 7.8e-60   NTclustered gi|325195820|emb|FR826611.1| 890382 g108419 i0 92.899 12.2916666666667 169 9 100 3 1 168 207 41 Albugo laibachii Nc14, genomic contig CONTIG_3778_NC14_v4_313_8 blastn 2065 243 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
24655446 24655446 PRJNA432257_S_NODE_115500_length_161_cov_1.169355_g115119_i0 PRJNA432257 115500 161 1.169355 1.88266155 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 86.1 1.32e-12   NTclustered gi|2795051063|ref|XM_067935916.1| 4785 g115119 i0 88.571 3.83229813664596 70 8 43 0 92 161 546 615 Phytophthora cinnamomi glycylpeptide N-tetradecanoyltransferase 2 (IUM83_11362), partial mRNA blastn 617 86.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
24656129 24656129 PRJNA432257_S_NODE_51920_length_228_cov_1.507853_g51539_i0 PRJNA432257 51920 228 1.507853 3.43790484 Phytopythium helicoides 126844 SAR_Eukaryotes SAR_Eukaryotes 119 1.98e-22   NTclustered gi|292494429|dbj|AB511937.1| 126844 g51539 i0 80.745 21.6008771929825 161 23 69 6 72 228 474 318 Phytopythium helicoides gene for ribosomal protein L10, partial cds, strain: CBS 286.31TA1 blastn 4925 119 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Phytopythium Phytopythium helicoides
24656289 24656289 PRJNA432257_S_NODE_63940_length_211_cov_1.344828_g63559_i0 PRJNA432257 63940 211 1.344828 2.83758708 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 150 6.389999999999998e-32   NTclustered gi|2794928342|ref|XM_067884665.1| 164328 g63559 i0 82.386 0.834123222748815 176 27 82 4 6 179 295 468 Phytophthora ramorum Tyrosine--tRNA ligase, cytoplasmic (KRP23_13897), partial mRNA blastn 176 150 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
24656485 24656485 PRJNA432257_S_NODE_79880_length_193_cov_2.250000_g79499_i0 PRJNA432257 79880 193 2.25 4.3425 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 167 5.7e-37   NTclustered gi|695466988|ref|XM_009541231.1| 67593 g79499 i0 84.615 1.84455958549223 169 24 87 2 25 192 622 455 Phytophthora sojae hypothetical protein mRNA blastn 356 167 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;