RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA432257" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA432257 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2980385 2980385 PRJNA432257_S_NODE_45463_length_239_cov_21.767327_g45082_i0 PRJNA432257 45463 239 21.767327 52.02391153 Turbatrix aceti 114909 Nematoda Nematoda 128 3.47e-25   NTclustered gi|76560686|gb|DQ145711.1| 114909 g45082 i0 86.441 41.5062761506276 118 14 49 2 84 200 1234 1118 Turbatrix aceti 28S ribosomal RNA gene, partial sequence blastn 9920 128 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Turbatrix Turbatrix aceti
4916909 4916909 PRJNA432257_S_NODE_59104_length_217_cov_3.116667_g58723_i0 PRJNA432257 59104 217 3.116667 6.76316739 Panagrolaimus 55784 Nematoda Nematoda 348 2.1800000000000002e-91   NTclustered gi|166014126|gb|EU253569.1| 55785 g58723 i0 95.455 72.0921658986175 220 7 100 2 1 217 2534 2753 Panagrolaimus sp. PS1159 28S large subunit ribosomal RNA gene, partial sequence blastn 15644 348 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrolaimus Panagrolaimus sp. PS1159
8083631 8083631 PRJNA432257_S_NODE_93767_length_181_cov_3.201389_g93386_i0 PRJNA432257 93767 181 3.201389 5.79451409 Howardula sp. SP-B 209946 Nematoda Nematoda 239 1.0999999999999999e-58   NTclustered gi|28208703|gb|AF519223.1| 209946 g93386 i0 91.011 88.2817679558011 178 15 98 1 1 178 1573 1749 Howardula sp. SP-B isolate B331 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence blastn 15979 239 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Allantonematidae Howardula Howardula sp. SP-B
14458904 14458904 PRJNA432257_S_NODE_71292_length_202_cov_2.236364_g70911_i0 PRJNA432257 71292 202 2.236364 4.51745528 Trichinella spiralis 6334 Nematoda Nematoda 54.7 0.005   NTclustered gi|339236050|ref|XM_003379532.1| 6334 g70911 i0 96.875 0.158415841584158 32 1 16 0 31 62 128 159 Trichinella spiralis serine protease hepsin (Tsp_03237) mRNA, complete cds blastn 32 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
16391321 16391321 PRJNA432257_S_NODE_57353_length_219_cov_89.170330_g56972_i0 PRJNA432257 57353 219 89.17033 195.2830227 root 1 Root_unresolved Root_unresolved 58.4 4.16e-4   NTclustered gi|1335348092|emb|LT965051.1| 45931 g56972 i0 97.059 13.8082191780822 34 1 16 0 36 69 1033 1066 Pratylenchus vulnus partial 28S rRNA gene, clone 1_1 blastn 3024 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
20831091 20831091 PRJNA432257_S_NODE_25797_length_294_cov_276.599222_g25416_i0 PRJNA432257 25797 294 276.599222 813.20171268 Koerneria sp. RS1982 358044 Nematoda Nematoda 189 1.9899999999999992e-43   NTclustered gi|150984687|gb|EF635005.1| 358044 g25416 i0 85.405 20.6394557823129 185 24 62 1 26 207 194 10 Koerneria sp. RS1982 small subunit ribosomal protein 28 (rps-28) mRNA, complete cds blastn 6068 189 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Koerneria Koerneria sp. RS1982

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;