RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA432257" and tax_phylum = "Negarnaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA432257 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2979662 2979662 PRJNA432257_S_NODE_108463_length_168_cov_1.809160_g108082_i0 PRJNA432257 108463 168 1.80916 3.0393888 Formivirus gorytis 2844681 Viruses Viruses 52.8 0.014   NTclustered gi|2500379381|ref|NC_076500.1| 2789450 g108082 i0 100 0.166666666666667 28 0 17 0 9 36 4094 4121 Hymenopteran orino-related virus OKIAV85 nucleoprotein (QKO73_gp1), hypothetical protein (QKO73_gp2), hypothetical protein (QKO73_gp3), glycoprotein (QKO73_gp4), and RdRp (QKO73_gp5) genes, complete cds blastn 28 52.8 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Nyamiviridae Formivirus Formivirus gorytis
24040386 24040386 PRJNA432257_S_NODE_1279_length_906_cov_1435.552359_g1183_i0 PRJNA432257 1279 906 1435.552359 13006.10437254 root 1 Root_unresolved Root_unresolved 1286 0   NTclustered gi|2288961152|gb|OP242455.1| 12814 g1183 i0 100 79.0883002207506 696 0 77 0 107 802 99 794 Mutant Respiratory syncytial virus clone RSV_mKate2_1-0006434_2269X, complete genome blastn 71654 1297 0.991518889745567 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Pneumoviridae Orthopneumovirus Orthopneumovirus bovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;