RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA432257" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA432257 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
429813 429813 PRJNA432257_S_NODE_51781_length_228_cov_2.811518_g51400_i0 PRJNA432257 51781 228 2.811518 6.41026104 Metamycoplasma salivarium 2124 Bacteria Bacteria 422 1.34e-113   NTclustered gi|1563679190|emb|LR214939.1| 2124 g51400 i0 100 1 228 0 100 0 1 228 200210 200437 Mycoplasma salivarium strain NCTC10113 genome assembly, plasmid: 2 blastn 228 422 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma salivarium
2980959 2980959 PRJNA432257_S_NODE_88923_length_185_cov_2.128378_g88542_i0 PRJNA432257 88923 185 2.128378 3.9374993 Haploplasma axanthum 29552 Bacteria Bacteria 52.8 0.016   NTclustered gi|1563809587|emb|LR215048.1| 29552 g88542 i0 96.875 0.172972972972973 32 0 17 1 27 58 1344680 1344650 Acholeplasma axanthum strain NCTC10138 genome assembly, chromosome: 1 blastn 32 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Haploplasma Haploplasma axanthum
6807952 6807952 PRJNA432257_S_NODE_8806_length_428_cov_6.199488_g8463_i0 PRJNA432257 8806 428 6.199488 26.53380864 uncultured Mollicutes bacterium 220137 Bacteria Bacteria 65.8 5.3e-6   NTclustered gi|2187163481|emb|OV788639.1| 220137 g8463 i0 97.368 0.25 38 1 9 0 283 320 1502053 1502016 uncultured Mollicutes bacterium isolate min17_bin64 genome assembly, chromosome: 1 blastn 107 65.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes       uncultured Mollicutes bacterium
9358377 9358377 PRJNA432257_S_NODE_8708_length_429_cov_86.793367_g8367_i0 PRJNA432257 8708 429 86.793367 372.34354443 uncultured Mollicutes bacterium 220137 Bacteria Bacteria 67.6 1.48e-6   NTclustered gi|2557660748|gb|OR396242.1| 220137 g8367 i0 100 8.36829836829837 36 0 8 0 356 391 486 521 Uncultured Mollicutes bacterium clone Zx50_unbinned&&k119_1492265 16S ribosomal RNA gene, partial sequence blastn 3590 67.6 1 Bacteria   Bacillati Mycoplasmatota Mollicutes       uncultured Mollicutes bacterium
11908388 11908388 PRJNA432257_S_NODE_39170_length_253_cov_8.467593_g38789_i0 PRJNA432257 39170 253 8.467593 21.42301029 Metamycoplasma salivarium 2124 Bacteria Bacteria 401 1.9799999999999994e-107   NTclustered gi|1563679190|emb|LR214939.1| 2124 g38789 i0 99.545 1.73913043478261 220 1 87 0 1 220 200514 200733 Mycoplasma salivarium strain NCTC10113 genome assembly, plasmid: 2 blastn 440 401 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma salivarium
17006429 17006429 PRJNA432257_S_NODE_118014_length_158_cov_3.636364_g117633_i0 PRJNA432257 118014 158 3.636364 5.74545512 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 54.7 0.004   NTclustered gi|2621705998|emb|OY764060.1| 1898209 g117633 i0 100 0.183544303797468 29 0 18 0 121 149 1320339 1320311 MAG: Acholeplasmataceae bacterium isolate e871f63d-8a2d-4cdd-b754-05539c673417 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;