RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA432257" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA432257 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9357722 9357722 PRJNA432257_S_NODE_39208_length_253_cov_4.217593_g38827_i0 PRJNA432257 39208 253 4.217593 10.67051029 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 52.8 0.023   NTclustered gi|2031940106|emb|OD957682.1| 5763 g38827 i0 90.244 0.162055335968379 41 3 16 1 22 62 9433 9394 Naegleria fowleri Karachi_NF001 strain blastn 41 52.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
11908738 11908738 PRJNA432257_S_NODE_65110_length_209_cov_9.093023_g64729_i0 PRJNA432257 65110 209 9.093023 19.00441807 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 52.8 0.018   NTclustered gi|2119416215|ref|XM_044699845.1| 51637 g64729 i0 94.118 0.162679425837321 34 2 16 0 19 52 194 227 Naegleria lovaniensis uncharacterized protein (C9374_009636), partial mRNA blastn 34 52.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
15732343 15732343 PRJNA432257_S_NODE_46073_length_238_cov_10.587065_g45692_i0 PRJNA432257 46073 238 10.587065 25.1972147 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 89.8 1.63e-13   NTclustered gi|2119426825|ref|XM_044701175.1| 5763 g45692 i0 83.333 0.80672268907563 96 16 40 0 74 169 442 537 Naegleria fowleri uncharacterized protein (FDP41_010834), partial mRNA blastn 192 89.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
18280863 18280863 PRJNA432257_S_NODE_15475_length_351_cov_12.130573_g15094_i0 PRJNA432257 15475 351 12.130573 42.57831123 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 54.7 0.009   NTclustered gi|2119443025|ref|XM_044704881.1| 5763 g15094 i0 100 0.165242165242165 29 0 8 0 44 72 150 178 Naegleria fowleri uncharacterized protein (FDP41_001761), partial mRNA blastn 58 54.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;