RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA432257" and tax_phylum = "Echinodermata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA432257 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6807378 6807378 PRJNA432257_S_NODE_43246_length_244_cov_1.835749_g42865_i0 PRJNA432257 43246 244 1.835749 4.47922756 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 52.8 0.022   NTclustered gi|2037983570|ref|XM_041604394.1| 7654 g42865 i0 100 0.229508196721311 28 0 11 0 156 183 1792 1765 PREDICTED: Lytechinus variegatus uncharacterized LOC121411593 (LOC121411593), transcript variant X1, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
18280735 18280735 PRJNA432257_S_NODE_119515_length_157_cov_1.808333_g119134_i0 PRJNA432257 119515 157 1.808333 2.83908281 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 143 7.47e-30   NTclustered gi|2038000323|ref|XM_041613285.1| 7654 g119134 i0 83.553 10.0891719745223 152 25 97 0 5 156 478 327 PREDICTED: Lytechinus variegatus calmodulin-beta-like (LOC121419026), mRNA blastn 1584 143 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
20831262 20831262 PRJNA432257_S_NODE_37457_length_257_cov_103.777273_g37076_i0 PRJNA432257 37457 257 103.777273 266.70759161 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 54.7 0.006   NTclustered gi|1752358866|ref|XM_030984384.1| 7668 g37076 i0 100 0.443579766536965 29 0 11 0 66 94 2459 2487 PREDICTED: Strongylocentrotus purpuratus probable low-specificity L-threonine aldolase 2 (LOC579654), transcript variant X1, mRNA blastn 114 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
25314849 25314849 PRJNA432257_S_NODE_36660_length_259_cov_73.720721_g36279_i0 PRJNA432257 36660 259 73.720721 190.93666739 Metazoa 33208 Echinodermata other_Eukaryota 54.7 0.007   NTclustered gi|2707423338|ref|XM_064103813.1| 7653 g36279 i0 100 0.474903474903475 29 0 11 0 80 108 8469 8441 PREDICTED: Lytechinus pictus receptor tyrosine-protein kinase erbB-4-like (LOC129255739), mRNA blastn 123 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;