RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA432257" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA432257 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1088594 1088594 PRJNA432257_S_NODE_121541_length_155_cov_3.042373_g121160_i0 PRJNA432257 121541 155 3.042373 4.71567815 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 270 3.23e-68   NTclustered gi|1837628855|gb|MN158348.1| 5909 g121160 i0 98.065 90.0322580645161 155 3 100 0 1 155 2903 2749 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 13955 270 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
4256929 4256929 PRJNA432257_S_NODE_63464_length_211_cov_22.988506_g63083_i0 PRJNA432257 63464 211 22.988506 48.50574766 Philasterides dicentrarchi 282688 SAR_Eukaryotes SAR_Eukaryotes 235 1.71e-57   NTclustered gi|49616744|gb|AY643504.1| 282688 g63083 i0 90.857 83.1279620853081 175 16 83 0 37 211 127 301 Philasterides dicentrarchi 26S ribosomal RNA gene, partial sequence blastn 17540 235 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Philasteridae Philasterides Philasterides dicentrarchi
5533442 5533442 PRJNA432257_S_NODE_47485_length_235_cov_45.742424_g47104_i0 PRJNA432257 47485 235 45.742424 107.4946964 Oxytricha trifallax 1172189 SAR_Eukaryotes SAR_Eukaryotes 126 1.22e-24   NTclustered gi|6851292|gb|AF192970.1| 1172189 g47104 i0 89.796 1.71489361702128 98 10 42 0 97 194 1456 1359 Oxytricha trifallax histone H4 gene, complete cds blastn 403 126 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Oxytricha Oxytricha trifallax
13842180 13842180 PRJNA432257_S_NODE_29971_length_279_cov_19.119835_g29590_i0 PRJNA432257 29971 279 19.119835 53.34433965 root 1 Root_unresolved Root_unresolved 438 1.6899999999999996e-118   NTclustered gi|10782|emb|X54004.1| 5908 g29590 i0 98.785 81.1362007168459 247 1 88 2 35 279 2538 2784 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 22637 438 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
15732924 15732924 PRJNA432257_S_NODE_91373_length_183_cov_2.102740_g90992_i0 PRJNA432257 91373 183 2.10274 3.8480142 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 291 3.03e-74   NTclustered gi|2651357791|gb|PP174306.1| 41631 g90992 i0 95.161 23.9344262295082 186 6 100 1 1 183 3861 3676 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4380 291 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
17666440 17666440 PRJNA432257_S_NODE_72694_length_200_cov_35.558282_g72313_i0 PRJNA432257 72694 200 35.558282 71.116564 root 1 Root_unresolved Root_unresolved 370 4.22e-98   NTclustered gi|10832|emb|X54512.1| 5911 g72313 i0 100 91.845 200 0 100 0 1 200 8115 8314 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 18369 370 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
19555186 19555186 PRJNA432257_S_NODE_18336_length_331_cov_1486.945578_g17955_i0 PRJNA432257 18336 331 1486.945578 4921.78986318 Telotrochidium sp. 1 TS-2013 1349867 SAR_Eukaryotes SAR_Eukaryotes 392 1.6199999999999994e-104   NTclustered gi|519419808|gb|KF287648.1| 1349867 g17955 i0 90.878 87.3504531722054 296 22 89 4 38 330 18 311 Telotrochidium sp. 1 TS-2013 large subunit ribosomal RNA gene, partial sequence blastn 28913 392 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Opisthonectidae Telotrochidium Telotrochidium sp. 1 TS-2013
20215009 20215009 PRJNA432257_S_NODE_58896_length_217_cov_25.794444_g58515_i0 PRJNA432257 58896 217 25.794444 55.97394348 root 1 Root_unresolved Root_unresolved 337 4.72e-88   NTclustered gi|1837628855|gb|MN158348.1| 5909 g58515 i0 98.942 83.6267281105991 189 0 86 2 1 187 5398 5210 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 18147 337 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
20830962 20830962 PRJNA432257_S_NODE_17337_length_338_cov_2.312292_g16956_i0 PRJNA432257 17337 338 2.312292 7.81554696 uncultured Uronychia sp. 2487777 SAR_Eukaryotes SAR_Eukaryotes 418 2.73e-112   NTclustered gi|1516250919|gb|MK177620.1| 2487777 g16956 i0 92.256 66.4319526627219 297 20 88 1 42 338 393 100 Uncultured Uronychia sp. clone DDI141.fa small subunit ribosomal RNA gene, partial sequence blastn 22454 418 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida     uncultured Uronychia sp.
23382260 23382260 PRJNA432257_S_NODE_71819_length_201_cov_36.030488_g71438_i0 PRJNA432257 71819 201 36.030488 72.42128088 Paramecium caudatum 5885 SAR_Eukaryotes SAR_Eukaryotes 180 7.69e-41   NTclustered gi|299830252|ref|NC_014262.1| 5885 g71438 i0 88.742 0.751243781094527 151 11 74 6 32 179 26006 25859 Paramecium caudatum mitochondrion, complete genome blastn 151 180 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium caudatum
24040613 24040613 PRJNA432257_S_NODE_69079_length_204_cov_91.113772_g68698_i0 PRJNA432257 69079 204 91.113772 185.87209488 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 185 1.6799999999999994e-42   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g68698 i0 91.791 1.97058823529412 134 10 65 1 33 165 3082 2949 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 402 185 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;