RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA432257" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA432257 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4257024 4257024 PRJNA432257_S_NODE_70204_length_203_cov_7.192771_g69823_i0 PRJNA432257 70204 203 7.192771 14.60132513 Leptolinea sp. HRD-7 2830982 Bacteria Bacteria 309 9.51e-80   NTclustered gi|2250018340|dbj|AP024710.1| 2830982 g69823 i0 99.412 0.83743842364532 170 1 84 0 34 203 410098 410267 Leptolinea sp. HRD-7 DNA, complete genome blastn 170 309 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Leptolinea Leptolinea sp. HRD-7
10633779 10633779 PRJNA432257_S_NODE_58069_length_218_cov_91.082873_g57688_i0 PRJNA432257 58069 218 91.082873 198.56066314 Leptolinea sp. HRD-7 2830982 Bacteria Bacteria 322 1.33e-83   NTclustered gi|2250018340|dbj|AP024710.1| 2830982 g57688 i0 98.378 0.848623853211009 185 0 83 2 1 182 426526 426342 Leptolinea sp. HRD-7 DNA, complete genome blastn 185 322 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Leptolinea Leptolinea sp. HRD-7
13842427 13842427 PRJNA432257_S_NODE_99031_length_177_cov_2.314286_g98650_i0 PRJNA432257 99031 177 2.314286 4.09628622 Bacteria 2 Bacteria Bacteria 172 1.0999999999999999e-38   NTclustered gi|675616209|gb|KM018332.1| 1540873 g98650 i0 84.358 3.70056497175141 179 25 100 3 1 177 2212 2035 Chloroflexi bacterium human oral taxon HOT-439 clone Env-PCR-Walk 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 655 172 1 Bacteria   Bacillati Chloroflexota         Chloroflexi bacterium human oral taxon HOT-439
14458370 14458370 PRJNA432257_S_NODE_31972_length_273_cov_1.766949_g31591_i0 PRJNA432257 31972 273 1.766949 4.82377077 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 425 1.28e-114   NTclustered gi|2874254133|emb|OY970218.1| 1672391 g31591 i0 94.872 167.582417582418 273 13 100 1 1 273 20313 20042 MAG: uncultured Chloroflexia bacterium isolate MFD04716.bin.1.117 genome assembly, chromosome: 1 blastn 45750 425 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
17006306 17006306 PRJNA432257_S_NODE_10634_length_399_cov_90.566298_g10273_i0 PRJNA432257 10634 399 90.566298 361.35952902 Anaerolineales bacterium 2073117 Bacteria Bacteria 67.6 1.36e-6   NTclustered gi|2556903179|gb|CP129482.1| 2073117 g10273 i0 100 0.0902255639097744 36 0 9 0 306 341 416422 416457 MAG: Anaerolineales bacterium isolate cMAG.14 chromosome, complete genome blastn 36 67.6 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
19555166 19555166 PRJNA432257_S_NODE_16796_length_341_cov_104.246711_g16415_i0 PRJNA432257 16796 341 104.246711 355.48128451 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 444 4.55e-120   NTclustered gi|2874253812|emb|OY969796.1| 1672391 g16415 i0 96.97 377.16715542522 264 8 77 0 40 303 3033499 3033762 MAG: uncultured Chloroflexia bacterium isolate MFD01872.bin.1.103 genome assembly, chromosome: 1 blastn 128614 444 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;