RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA431371" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA431371 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7466046 7466046 PRJNA431371_P_NODE_22546_length_267_cov_1.484536_g22473_i0 PRJNA431371 22546 267 1.484536 3.96371112 Lawsonia 41707 Bacteria Bacteria 394 3.52e-105   NTclustered gi|2318587541|gb|CP107054.1| 29546 g22473 i0 93.258 245.756554307116 267 18 100 0 1 267 655405 655139 Lawsonia intracellularis strain PPE-GX01-2022 chromosome, complete genome blastn 65617 394 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Lawsonia Lawsonia intracellularis
24654871 24654871 PRJNA431371_P_NODE_8060_length_435_cov_3.104972_g7987_i0 PRJNA431371 8060 435 3.104972 13.5066282 Desulfolutivibrio sulfoxidireducens 2773299 Bacteria Bacteria 122 3.1599999999999996e-23   NTclustered gi|1863426051|gb|CP045506.1| 2773299 g7987 i0 88.889 1.15632183908046 99 11 26 0 337 435 2505395 2505297 Desulfolutivibrio sulfoxidireducens strain DSM 106783 chromosome, complete genome blastn 503 122 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfolutivibrio Desulfolutivibrio sulfoxidireducens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;