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contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA431371" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 15 ✖

tax_clade 1

bioproject 1

  • PRJNA431371 · 15 ✖

analysis 1

  • blastn · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
428268 428268 PRJNA431371_P_NODE_26361_length_250_cov_0.870056_g26288_i0 PRJNA431371 26361 250 0.870056 2.17514 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 174 4.63e-39   NTclustered gi|695394000|ref|XM_009522467.1| 67593 g26288 i0 86.25 1.248 160 22 64 0 42 201 298 457 Phytophthora sojae hypothetical protein mRNA blastn 312 174 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
428375 428375 PRJNA431371_P_NODE_3101_length_639_cov_1.360424_g3028_i0 PRJNA431371 3101 639 1.360424 8.69310936 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 267 2.08e-66   NTclustered gi|2795049948|ref|XM_067938671.1| 4785 g3028 i0 80 13.2472613458529 365 69 57 4 272 634 543 181 Phytophthora cinnamomi S-phase kinase-associated protein 1A (IUM83_13963), partial mRNA blastn 8465 267 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
1703415 1703415 PRJNA431371_P_NODE_6502_length_478_cov_1.520988_g6429_i0 PRJNA431371 6502 478 1.520988 7.27032264 Phytophthora asparagi 631358 SAR_Eukaryotes SAR_Eukaryotes 174 9.52e-39   NTclustered gi|2314988779|ref|NC_067069.1| 631358 g6429 i0 81.25 3.16317991631799 224 34 46 5 259 478 12242 12461 Phytophthora asparagi voucher CBS132095 mitochondrion, complete genome blastn 1512 174 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora asparagi
2363425 2363425 PRJNA431371_P_NODE_20222_length_284_cov_1.701422_g20149_i0 PRJNA431371 20222 284 1.701422 4.83203848 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 292 1.4199999999999999e-74   NTclustered gi|2248513440|ref|NC_063805.1| 4781 g20149 i0 86.792 96.169014084507 265 31 93 4 4 266 2448 2186 Plasmopara halstedii isolate 710 mitochondrion, complete genome blastn 27312 292 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
5531611 5531611 PRJNA431371_P_NODE_1185_length_886_cov_5.220172_g1123_i0 PRJNA431371 1185 886 5.220172 46.25072392 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 320 2.2199999999999995e-82   NTclustered gi|2795019585|ref|XM_067931629.1| 4785 g1123 i0 81.39 35.5914221218962 403 65 45 8 78 475 14 411 Phytophthora cinnamomi peptidyl-prolyl cis-trans isomerase (IUM83_07343), partial mRNA blastn 31534 320 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
5531855 5531855 PRJNA431371_P_NODE_22265_length_269_cov_1.964286_g22192_i0 PRJNA431371 22265 269 1.964286 5.28392934 Halophytophthora thermoambigua 2874305 SAR_Eukaryotes SAR_Eukaryotes 165 3.03e-36   NTclustered gi|2213903340|gb|OK091352.1| 2874305 g22192 i0 79.835 83.7843866171004 243 35 88 9 12 247 528 293 Halophytophthora sp. MHJ-2021h isolate BD630 from Portugal heat shock protein 90 (hsp90) gene, partial cds blastn 22538 165 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Halophytophthora Halophytophthora thermoambigua
6805858 6805858 PRJNA431371_P_NODE_19206_length_292_cov_1.054795_g19133_i0 PRJNA431371 19206 292 1.054795 3.0800014 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 115 3.4e-21   NTclustered gi|2794905809|ref|XM_067889902.1| 164328 g19133 i0 89.13 25.6301369863014 92 10 32 0 8 99 215 306 Phytophthora ramorum 13 kDa ribonucleoprotein-associated protein (KRP23_4892), partial mRNA blastn 7484 115 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
8081529 8081529 PRJNA431371_P_NODE_25907_length_250_cov_0.870056_g25834_i0 PRJNA431371 25907 250 0.870056 2.17514 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 171 5.99e-38   NTclustered gi|669166303|ref|XM_008620492.1| 1156394 g25834 i0 80.93 17.124 215 41 86 0 4 218 317 103 Saprolegnia diclina VS20 ribonucleoprotein-associated protein mRNA blastn 4281 171 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
10632298 10632298 PRJNA431371_P_NODE_329_length_1325_cov_2.606230_g282_i0 PRJNA431371 329 1325 2.60623 34.5325475 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 632 3.8099999999999985e-176   NTclustered gi|166044823|emb|CU351082.1| 100861 g282 i0 80.404 28.457358490566 842 155 63 9 253 1089 84 920 Aphanomyces euteiches cDNA blastn 37706 632 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
11906802 11906802 PRJNA431371_P_NODE_16230_length_318_cov_2.412245_g16157_i0 PRJNA431371 16230 318 2.412245 7.6709391 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 209 1.67e-49   NTclustered gi|813207114|ref|XM_012354790.1| 695850 g16157 i0 82.979 12.0534591194969 235 36 73 4 61 293 432 200 Saprolegnia parasitica CBS 223.65 60S ribosomal protein partial mRNA blastn 3833 209 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
13181814 13181814 PRJNA431371_P_NODE_18871_length_294_cov_3.361991_g18798_i0 PRJNA431371 18871 294 3.361991 9.88425354 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 261 4.16e-65   NTclustered gi|9858457|gb|AF085344.1|AF085344 82926 g18798 i0 89.1 43.2312925170068 211 22 72 1 3 213 274 483 Pythium splendens calmodulin mRNA, complete cds blastn 12710 261 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
13182114 13182114 PRJNA431371_P_NODE_3471_length_613_cov_1.424074_g3398_i0 PRJNA431371 3471 613 1.424074 8.72957362 Phytophthora sumatera 3073786 SAR_Eukaryotes SAR_Eukaryotes 126 3.53e-24   NTclustered gi|2689407522|gb|OR549606.1| 3073786 g3398 i0 78.462 11.7879282218597 195 40 32 2 355 548 649 456 Phytophthora sumatera isolate JV146 cytochrome oxidase subunit II (cox2) gene, partial cds; hypothetical protein (orf32) gene, complete cds; and cytochrome oxidase subunit I (cox1) gene, partial cds; mitochondrial blastn 7226 126 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sumatera
13182191 13182191 PRJNA431371_P_NODE_4991_length_533_cov_2.676087_g4918_i0 PRJNA431371 4991 533 2.676087 14.26354371 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 6.13e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g4918 i0 80.533 63.4652908067542 375 65 69 4 25 392 68 441 Aphanomyces astaci polyubiquitin mRNA blastn 33827 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
20829620 20829620 PRJNA431371_P_NODE_12017_length_363_cov_4.893103_g11944_i0 PRJNA431371 12017 363 4.893103 17.76196389 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.003   NTclustered gi|695467473|ref|XM_009541341.1| 67593 g11944 i0 100 0.165289256198347 30 0 8 0 129 158 2872 2843 Phytophthora sojae hypothetical protein partial mRNA blastn 60 56.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
23380197 23380197 PRJNA431371_P_NODE_16079_length_320_cov_1.246964_g16006_i0 PRJNA431371 16079 320 1.246964 3.9902848 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 122 2.26e-23   NTclustered gi|675206244|ref|XM_008913759.1| 761204 g16006 i0 87.619 8.946875 105 13 33 0 213 317 522 418 Phytophthora parasitica INRA-310 60S ribosomal protein L11 mRNA blastn 2863 122 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;