RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA431371" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA431371 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14456902 14456902 PRJNA431371_P_NODE_15552_length_325_cov_0.888889_g15479_i0 PRJNA431371 15552 325 0.888889 2.88888925 Labilithrix luteola 1391654 Bacteria Bacteria 414 3.38e-111   NTclustered gi|913610804|gb|CP012333.1| 1391654 g15479 i0 89.489 154 333 27 100 5 1 325 3942562 3942230 Labilithrix luteola strain DSM 27648, complete genome blastn 50050 414 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
22104576 22104576 PRJNA431371_P_NODE_14838_length_331_cov_2.387597_g14765_i0 PRJNA431371 14838 331 2.387597 7.90294607 Sandaracinus amylolyticus 927083 Bacteria Bacteria 52.8 0.031   NTclustered gi|816953346|gb|CP011125.1| 927083 g14765 i0 100 0.0845921450151057 28 0 8 0 93 120 378174 378147 Sandaracinus amylolyticus strain DSM 53668, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
22104805 22104805 PRJNA431371_P_NODE_26278_length_250_cov_0.870056_g26205_i0 PRJNA431371 26278 250 0.870056 2.17514 Labilithrix luteola 1391654 Bacteria Bacteria 303 5.66e-78   NTclustered gi|913610804|gb|CP012333.1| 1391654 g26205 i0 89.344 151.9 244 22 97 4 1 242 3942275 3942034 Labilithrix luteola strain DSM 27648, complete genome blastn 37975 303 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;