RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA431371" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA431371 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
428595 428595 PRJNA431371_P_NODE_8741_length_420_cov_1.285303_g8668_i0 PRJNA431371 8741 420 1.285303 5.3982726 Paravahlkampfia ustiana 166958 Heterolobosea other_Eukaryota 776 0   NTclustered gi|54792394|emb|AJ698846.1| 166958 g8668 i0 100 2.96190476190476 420 0 100 0 1 420 158 577 Paravahlkampfia ustiana ITS1, 5.8S rRNA gene and ITS2, type strain CCAP1588/6T blastn 1244 776 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Paravahlkampfia Paravahlkampfia ustiana
11907006 11907006 PRJNA431371_P_NODE_25970_length_250_cov_0.870056_g25897_i0 PRJNA431371 25970 250 0.870056 2.17514 Tetramitus jugosus 166959 Heterolobosea other_Eukaryota 152 2.17e-32   NTclustered gi|2233316042|emb|OW569396.1| 166959 g25897 i0 79.13 34.132 230 41 90 7 2 226 2887 3114 Tetramitus jugosus genome assembly, organelle: mitochondrion blastn 8533 152 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Tetramitus Tetramitus jugosus
19554007 19554007 PRJNA431371_P_NODE_19356_length_290_cov_1.774194_g19283_i0 PRJNA431371 19356 290 1.774194 5.1451626 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 128 4.34e-25   NTclustered gi|2119449729|ref|XM_044698144.1| 51637 g19283 i0 83.942 0.472413793103448 137 18 47 4 3 137 154 288 Naegleria lovaniensis uncharacterized protein (C9374_008104), partial mRNA blastn 137 128 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
22104667 22104667 PRJNA431371_P_NODE_18818_length_295_cov_1.387387_g18745_i0 PRJNA431371 18818 295 1.387387 4.09279165 Neovahlkampfia damariscottae 166956 Heterolobosea other_Eukaryota 139 2.04e-28   NTclustered gi|2877467367|gb|PQ835000.1| 166956 g18745 i0 76.642 3.08474576271186 274 50 91 13 29 295 46589 46323 Neovahlkampfia damariscottae strain CCAP:1588/7 mitochondrion, complete genome blastn 910 139 1 Eukaryota Discoba   Heterolobosea     Neovahlkampfiidae Neovahlkampfia Neovahlkampfia damariscottae
22104712 22104712 PRJNA431371_P_NODE_21018_length_278_cov_2.985366_g20945_i0 PRJNA431371 21018 278 2.985366 8.29931748 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 100 9.01e-17   NTclustered gi|2216086608|gb|ON142618.1| 5763 g20945 i0 81.061 7.94604316546763 132 19 46 4 142 269 183 312 Naegleria fowleri isolate SI2 large subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 2209 100 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
24654386 24654386 PRJNA431371_P_NODE_18020_length_302_cov_1.179039_g17947_i0 PRJNA431371 18020 302 1.179039 3.56069778 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 353 6.88e-93   NTclustered gi|290971318|ref|XM_002668414.1| 5762 g17947 i0 88.176 92.6953642384106 296 35 98 0 7 302 731 436 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_61055), partial mRNA blastn 27994 353 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;