RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA431371" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA431371 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3638977 3638977 PRJNA431371_P_NODE_12603_length_356_cov_1.399293_g12530_i0 PRJNA431371 12603 356 1.399293 4.98148308 Chlorophyta 3041 Plants Plants 202 3.1599999999999996e-47   NTclustered gi|255072104|ref|XM_002499681.1| 296587 g12530 i0 80.212 29.4466292134831 283 44 78 10 80 356 2019 1743 Micromonas commoda predicted protein partial mRNA blastn 10483 202 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
6806156 6806156 PRJNA431371_P_NODE_34366_length_243_cov_0.905882_g34293_i0 PRJNA431371 34366 243 0.905882 2.20129326 Chlorella variabilis 554065 Plants Plants 222 1.58e-53   NTclustered gi|552812080|ref|XM_005843566.1| 554065 g34293 i0 83.333 30.7489711934156 240 40 99 0 4 243 1143 904 Chlorella variabilis hypothetical protein (CHLNCDRAFT_59237) mRNA, complete cds blastn 7472 222 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
8081378 8081378 PRJNA431371_P_NODE_18067_length_301_cov_2.026316_g17994_i0 PRJNA431371 18067 301 2.026316 6.09921116 Chlamydomonas reinhardtii 3055 Plants Plants 215 3.38e-51   NTclustered gi|2082261495|ref|XM_001692933.2| 3055 g17994 i0 84.977 34.2624584717608 213 30 70 2 2 213 715 926 Chlamydomonas reinhardtii ribosomal protein L8 (CHLRE_12g535851v5), mRNA blastn 10313 215 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
10632075 10632075 PRJNA431371_P_NODE_23109_length_263_cov_1.215789_g23036_i0 PRJNA431371 23109 263 1.215789 3.19752507 Chloropicon roscoffensis 1461544 Plants Plants 134 8.34e-27   NTclustered gi|2863415986|gb|CP145460.1| 1461544 g23036 i0 76.404 3.78707224334601 267 51 99 11 3 263 1246359 1246099 Chloropicon roscoffensis strain RCC2335 chromosome 1 blastn 996 134 1 Eukaryota   Viridiplantae Chlorophyta Chloropicophyceae Chloropicales Chloropicaceae Chloropicon Chloropicon roscoffensis
15731099 15731099 PRJNA431371_P_NODE_4593_length_551_cov_5.548117_g4520_i0 PRJNA431371 4593 551 5.548117 30.57012467 Chlamydomonas reinhardtii 3055 Plants Plants 351 4.77e-92   NTclustered gi|2082235498|ref|XM_001700320.2| 3055 g4520 i0 85.07 65.7259528130672 355 42 64 5 1 354 115 459 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g002300v5), mRNA blastn 36215 351 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
24654902 24654902 PRJNA431371_P_NODE_9340_length_407_cov_1.550898_g9267_i0 PRJNA431371 9340 407 1.550898 6.31215486 Mantoniella tinhauana 3097027 Plants Plants 222 2.81e-53   NTclustered gi|2735153281|gb|CP140066.1| 3097027 g9267 i0 84.255 3.11056511056511 235 30 57 6 4 233 81884 82116 Mantoniella tinhauana isolate LFS chromosome 5 blastn 1266 222 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;