RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA431371" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA431371 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2978869 2978869 PRJNA431371_P_NODE_23723_length_258_cov_1.389189_g23650_i0 PRJNA431371 23723 258 1.389189 3.58410762 Campylobacter rectus 203 Bacteria Bacteria 416 7.229999999999998e-112   NTclustered gi|1622745323|gb|CP012543.1| 203 g23650 i0 95.736 2 258 11 100 0 1 258 1939289 1939546 Campylobacter rectus strain ATCC 33238, complete genome blastn 516 416 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter rectus
19554179 19554179 PRJNA431371_P_NODE_27316_length_249_cov_0.875000_g27243_i0 PRJNA431371 27316 249 0.875 2.17875 Campylobacter showae 204 Bacteria Bacteria 449 6.840000000000001e-122   NTclustered gi|1483583493|emb|LT631417.1| 204 g27243 i0 99.197 2 249 2 100 0 1 249 272009 271761 Campylobacter showae genome assembly, chromosome: I blastn 498 449 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
23380462 23380462 PRJNA431371_P_NODE_28919_length_248_cov_0.880000_g28846_i0 PRJNA431371 28919 248 0.88 2.1824 Caminibacter pacificus 1424653 Bacteria Bacteria 54.7 0.006   NTclustered gi|1690432421|gb|CP027432.2| 1424653 g28846 i0 96.97 0.133064516129032 33 0 13 1 130 162 1556101 1556132 Caminibacter pacificus strain TB6 chromosome, complete genome blastn 33 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nautiliaceae Caminibacter Caminibacter pacificus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;