RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA431371" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA431371 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6806156 6806156 PRJNA431371_P_NODE_34366_length_243_cov_0.905882_g34293_i0 PRJNA431371 34366 243 0.905882 2.20129326 Chlorella variabilis 554065 Plants Plants 222 1.58e-53   NTclustered gi|552812080|ref|XM_005843566.1| 554065 g34293 i0 83.333 30.7489711934156 240 40 99 0 4 243 1143 904 Chlorella variabilis hypothetical protein (CHLNCDRAFT_59237) mRNA, complete cds blastn 7472 222 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
8081378 8081378 PRJNA431371_P_NODE_18067_length_301_cov_2.026316_g17994_i0 PRJNA431371 18067 301 2.026316 6.09921116 Chlamydomonas reinhardtii 3055 Plants Plants 215 3.38e-51   NTclustered gi|2082261495|ref|XM_001692933.2| 3055 g17994 i0 84.977 34.2624584717608 213 30 70 2 2 213 715 926 Chlamydomonas reinhardtii ribosomal protein L8 (CHLRE_12g535851v5), mRNA blastn 10313 215 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
15731099 15731099 PRJNA431371_P_NODE_4593_length_551_cov_5.548117_g4520_i0 PRJNA431371 4593 551 5.548117 30.57012467 Chlamydomonas reinhardtii 3055 Plants Plants 351 4.77e-92   NTclustered gi|2082235498|ref|XM_001700320.2| 3055 g4520 i0 85.07 65.7259528130672 355 42 64 5 1 354 115 459 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g002300v5), mRNA blastn 36215 351 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;