RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA431371" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA431371 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8081786 8081786 PRJNA431371_P_NODE_4627_length_550_cov_1.406709_g4554_i0 PRJNA431371 4627 550 1.406709 7.7368995 Stanieria cyanosphaera 102116 Bacteria Bacteria 289 3.79e-73   NTclustered gi|17976754|emb|AJ252121.1| 111780 g4554 i0 79.653 29.1436363636364 403 80 73 2 149 550 885 484 Dermocarpa sp. strain PCC 7437 partial gap gene for NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) blastn 16029 289 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Pleurocapsales Dermocarpellaceae Stanieria Stanieria cyanosphaera
10632238 10632238 PRJNA431371_P_NODE_30169_length_246_cov_1.421965_g30096_i0 PRJNA431371 30169 246 1.421965 3.4980339 Limnothrix sp. BL-A-16 3104318 Bacteria Bacteria 372 1.5e-98   NTclustered gi|2804687704|gb|CP166615.1| 3104318 g30096 i0 93.902 1 246 15 100 0 1 246 2440553 2440308 MAG: Limnothrix sp. BL-A-16 chromosome, complete genome blastn 246 372 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Pseudanabaenales Pseudanabaenaceae Limnothrix Limnothrix sp. BL-A-16
10632459 10632459 PRJNA431371_P_NODE_7629_length_445_cov_1.924731_g7556_i0 PRJNA431371 7629 445 1.924731 8.56505295 Cyanobacterium aponinum 379064 Bacteria Bacteria 54.7 0.012   NTclustered gi|428682694|gb|CP003947.1| 755178 g7556 i0 92.105 0.413483146067416 38 3 9 0 22 59 1654292 1654329 Cyanobacterium aponinum PCC 10605 chromosome, complete genome blastn 184 54.7 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcales Geminocystaceae Cyanobacterium Cyanobacterium aponinum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;