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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA429937" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA429937 · 13 ✖

analysis 1

  • blastn · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6190849 6190849 PRJNA429937_P_NODE_78765_length_370_cov_3.557185_g56437_i0 PRJNA429937 78765 370 3.557185 13.1615845 Verrucalvaceae 120409 SAR_Eukaryotes SAR_Eukaryotes 665 0   NTclustered gi|698793877|ref|XR_717099.1| 112090 g56437 i0 99.189 99.7108108108108 370 2 100 1 1 370 609 977 Aphanomyces astaci 18S ribosomal RNA rRNA blastn 36893 671 0.991058122205663 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
8079255 8079255 PRJNA429937_P_NODE_144867_length_197_cov_3.797619_g122240_i0 PRJNA429937 144867 197 3.797619 7.48130943 Phytophthora megasperma 4788 SAR_Eukaryotes SAR_Eukaryotes 289 1.1899999999999998e-73   NTclustered gi|2440150|emb|X75631.1| 4788 g122240 i0 95.604 86.6192893401015 182 4 91 2 18 197 2855 2676 P.megasperma gene for 28S ribosomal RNA blastn 17064 289 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
10629446 10629446 PRJNA429937_P_NODE_10689_length_1111_cov_4.596118_g6277_i0 PRJNA429937 10689 1111 4.596118 51.06287098 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 281 1.32e-70   NTclustered gi|2794924106|ref|XM_067882382.1| 164328 g6277 i0 85.294 1.13951395139514 272 40 43 0 1 272 1735 1464 Phytophthora ramorum Cyclin-dependent kinase 3 (KRP23_11803), partial mRNA blastn 1266 281 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
10629465 10629465 PRJNA429937_P_NODE_108389_length_278_cov_7343.935743_g85768_i0 PRJNA429937 108389 278 7343.935743 20416.14136554 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 418 2.189999999999999e-112   NTclustered gi|325194343|emb|FR825184.1| 890382 g85768 i0 93.617 101.809352517986 282 14 100 2 1 278 85 366 Albugo laibachii Nc14, genomic contig CONTIG_1822_NC14_v4_1483_32232 blastn 28303 418 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
13179505 13179505 PRJNA429937_P_NODE_12991_length_1013_cov_4.948171_g6277_i2 PRJNA429937 12991 1013 4.948171 50.12497223 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 440 1.8799999999999998e-118   NTclustered gi|675195502|ref|XM_008908388.1| 761204 g6277 i2 85.116 3.67620927936821 430 64 42 0 584 1013 1595 2024 Phytophthora parasitica INRA-310 CMGC/CDK/CDC2 protein kinase, variant 1 mRNA blastn 3724 440 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
14454805 14454805 PRJNA429937_P_NODE_137552_length_209_cov_10.488889_g114925_i0 PRJNA429937 137552 209 10.488889 21.92177801 Globisporangium rostratifingens 2711122 SAR_Eukaryotes SAR_Eukaryotes 383 5.72e-102   NTclustered gi|573007537|gb|HQ643761.2| 2711122 g114925 i0 100 99.0526315789474 207 0 99 0 3 209 3813 3607 Pythium rostratifingens voucher CBS115464 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 20702 383 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium rostratifingens
15728689 15728689 PRJNA429937_P_NODE_154373_length_165_cov_6.610294_g131746_i0 PRJNA429937 154373 165 6.610294 10.9069851 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 300 4.46e-77   NTclustered gi|325194423|emb|FR825253.1| 890382 g131746 i0 99.398 100.575757575758 166 0 100 1 1 165 235 400 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 16595 300 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
17003715 17003715 PRJNA429937_P_NODE_29454_length_672_cov_6.611198_g17844_i0 PRJNA429937 29454 672 6.611198 44.42725056 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 69.4 6.65e-7   NTclustered gi|166997812|emb|CU469389.7| 123356 g17844 i0 83.784 0.327380952380952 74 11 11 1 50 122 103503 103430 H.parasitica DNA sequence from clone HpEmoy2-12J23, complete sequence blastn 220 69.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
19553481 19553481 PRJNA429937_P_NODE_8876_length_1203_cov_11.770017_g5224_i0 PRJNA429937 8876 1203 11.770017 141.59330451 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 689 0   NTclustered gi|669172050|ref|XM_008623152.1| 1156394 g5224 i0 79.753 4.25436408977556 973 180 80 14 215 1179 1406 443 Saprolegnia diclina VS20 ketol-acid reductoisomerase partial mRNA blastn 5118 689 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
22104265 22104265 PRJNA429937_P_NODE_97838_length_308_cov_663.028674_g75232_i0 PRJNA429937 97838 308 663.028674 2042.12831592 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 545 1.0799999999999999e-150   NTclustered gi|325194423|emb|FR825253.1| 890382 g75232 i0 99.016 98.6558441558442 305 1 99 2 5 308 844 541 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 30386 545 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
23378964 23378964 PRJNA429937_P_NODE_47599_length_515_cov_103.670782_g30896_i0 PRJNA429937 47599 515 103.670782 533.9045273 Globisporangium rostratifingens 2711122 SAR_Eukaryotes SAR_Eukaryotes 911 0   NTclustered gi|573007537|gb|HQ643761.2| 2711122 g30896 i0 98.459 99.7145631067961 519 4 100 1 1 515 3102 3620 Pythium rostratifingens voucher CBS115464 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 51353 911 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium rostratifingens
24039484 24039484 PRJNA429937_P_NODE_67119_length_414_cov_716.877922_g46052_i0 PRJNA429937 67119 414 716.877922 2967.87459708 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 521 2.5199999999999992e-143   NTclustered gi|33520249|gb|AY273994.1| 127444 g46052 i0 89.951 98.3115942028985 408 36 98 5 5 408 413 7 Pythium undulatum large subunit ribosomal RNA gene, partial sequence blastn 40701 521 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Elongisporangium Elongisporangium undulatum
24039510 24039510 PRJNA429937_P_NODE_71839_length_395_cov_541.628415_g50082_i0 PRJNA429937 71839 395 541.628415 2139.43223925 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 601 2.9899999999999996e-167   NTclustered gi|90655131|gb|DQ361252.1| 4794 g50082 i0 94.602 98.2455696202532 389 20 98 1 4 391 75 463 Phytophthora drechsleri large subunit ribosomal RNA gene, partial sequence blastn 38807 606 0.991749174917492 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora drechsleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;