RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA429937" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA429937 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1087647 1087647 PRJNA429937_P_NODE_58961_length_452_cov_3.673759_g39526_i0 PRJNA429937 58961 452 3.673759 16.60539068 Metazoa 33208 Nematoda Nematoda 654 0   NTclustered gi|158821895|gb|EU195959.1| 479134 g39526 i0 100 34.0420353982301 354 0 98 0 1 354 1555 1908 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 15387 654 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
3638256 3638256 PRJNA429937_P_NODE_103703_length_291_cov_5.679389_g81086_i0 PRJNA429937 103703 291 5.679389 16.52702199 Metazoa 33208 Nematoda Nematoda 67.6 9.63e-7   NTclustered gi|157431636|gb|AY602177.2| 35559 g81086 i0 100 12.3711340206186 36 0 12 0 77 112 1823 1858 Rhabditella axei strain DF5006 28S large subunit ribosomal RNA gene, partial sequence blastn 3600 67.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditella Rhabditella axei
4252806 4252806 PRJNA429937_P_NODE_126764_length_232_cov_2.793103_g104137_i0 PRJNA429937 126764 232 2.793103 6.47999896 Rhabditis sp. DF5059 479136 Nematoda Nematoda 313 8.62e-81   NTclustered gi|158821900|gb|EU195964.1| 479136 g104137 i0 90.4 11.7413793103448 250 6 100 5 1 232 1897 2146 Rhabditis sp. DF5059 28S ribosomal RNA gene, partial sequence blastn 2724 313 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditis Rhabditis sp. DF5059
6190591 6190591 PRJNA429937_P_NODE_32665_length_635_cov_3.932343_g20058_i0 PRJNA429937 32665 635 3.932343 24.97037805 Metazoa 33208 Nematoda Nematoda 67.6 2.25e-6   NTclustered gi|157431636|gb|AY602177.2| 35559 g20058 i0 100 5.66929133858268 36 0 6 0 286 321 1823 1858 Rhabditella axei strain DF5006 28S large subunit ribosomal RNA gene, partial sequence blastn 3600 67.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditella Rhabditella axei
11905227 11905227 PRJNA429937_P_NODE_31470_length_648_cov_4.071082_g19223_i0 PRJNA429937 31470 648 4.071082 26.38061136 Distolabrellus veechi 96664 Nematoda Nematoda 329 2.66e-85   NTclustered gi|157787504|gb|EF990725.1| 96664 g19223 i0 85.207 50.4583333333333 338 30 52 11 237 572 2573 2892 Distolabrellus veechi strain SB202 28S large subunit ribosomal RNA gene, partial sequence blastn 32697 329 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Distolabrellus Distolabrellus veechi
15730013 15730013 PRJNA429937_P_NODE_74313_length_386_cov_3.112045_g52301_i0 PRJNA429937 74313 386 3.112045 12.0124937 Diploscapter sp. JU359 479134 Nematoda Nematoda 464 3.9899999999999997e-126   NTclustered gi|158821895|gb|EU195959.1| 479134 g52301 i0 100 28.8678756476684 251 0 88 0 1 251 1805 1555 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 11143 464 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
15730303 15730303 PRJNA429937_P_NODE_93673_length_321_cov_3.712329_g71083_i0 PRJNA429937 93673 321 3.712329 11.91657609 Diploscapter sp. JU359 479134 Nematoda Nematoda 514 3.1999999999999996e-141   NTclustered gi|158821895|gb|EU195959.1| 479134 g71083 i0 95.95 40.3676012461059 321 2 100 1 1 321 1805 1496 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 12958 514 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
22102135 22102135 PRJNA429937_P_NODE_107378_length_281_cov_4.273810_g84758_i0 PRJNA429937 107378 281 4.27381 12.0094061 Diploscapter sp. JU359 479134 Nematoda Nematoda 520 5.909999999999999e-143   NTclustered gi|158821895|gb|EU195959.1| 479134 g84758 i0 100 38.5266903914591 281 0 100 0 1 281 1525 1805 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 10826 520 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;