RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA429937" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA429937 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
427548 427548 PRJNA429937_P_NODE_86941_length_343_cov_4.490446_g64384_i0 PRJNA429937 86941 343 4.490446 15.40222978 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 507 5.76e-139   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g64384 i0 93.548 26.5801749271137 341 21 99 1 4 343 2410 2070 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9117 507 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
1700386 1700386 PRJNA429937_P_NODE_102682_length_294_cov_5.479245_g80068_i0 PRJNA429937 102682 294 5.479245 16.1089803 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 86.1 2.69e-12   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g80068 i0 86.25 19.8401360544218 80 10 27 1 1 80 4011 4089 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5833 86.1 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
14456147 14456147 PRJNA429937_P_NODE_70252_length_402_cov_3.410188_g48687_i0 PRJNA429937 70252 402 3.410188 13.70895576 Neovahlkampfia damariscottae 166956 Heterolobosea other_Eukaryota 93.5 2.27e-14   NTclustered gi|2877467367|gb|PQ835000.1| 166956 g48687 i0 78.571 1.5 154 24 38 6 121 271 14422 14275 Neovahlkampfia damariscottae strain CCAP:1588/7 mitochondrion, complete genome blastn 603 93.5 1 Eukaryota Discoba   Heterolobosea     Neovahlkampfiidae Neovahlkampfia Neovahlkampfia damariscottae
17003327 17003327 PRJNA429937_P_NODE_153014_length_170_cov_7.780142_g130387_i0 PRJNA429937 153014 170 7.780142 13.2262414 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 176 8.09e-40   NTclustered gi|2031941096|emb|OD957823.1| 5763 g130387 i0 94.017 2.14705882352941 117 5 69 2 3 117 325 441 Naegleria fowleri Karachi_NF001 strain blastn 365 176 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;