RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA429937" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA429937 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
425907 425907 PRJNA429937_P_NODE_138461_length_208_cov_2.022346_g115834_i0 PRJNA429937 138461 208 2.022346 4.20647968 Candidatus Rhabdochlamydia porcellionis 225148 Bacteria Bacteria 385 1.58e-102   NTclustered gi|2082223669|gb|CP075585.1| 225148 g115834 i0 100 2 208 0 100 0 1 208 1113091 1113298 Candidatus Rhabdochlamydia porcellionis strain 15C chromosome, complete genome blastn 416 385 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae Candidatus Rhabdochlamydia Candidatus Rhabdochlamydia porcellionis
427263 427263 PRJNA429937_P_NODE_70001_length_403_cov_3.008021_g48471_i0 PRJNA429937 70001 403 3.008021 12.12232463 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 706 0   NTclustered gi|336478352|emb|FR872580.1| 765952 g48471 i0 99.486 0.965260545905707 389 1 97 1 15 403 1839926 1840313 Parachlamydia acanthamoebae UV-7, complete genome blastn 389 706 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
17003148 17003148 PRJNA429937_P_NODE_130474_length_224_cov_1.846154_g107847_i0 PRJNA429937 130474 224 1.846154 4.13538496 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 167 6.81e-37   NTclustered gi|336478352|emb|FR872580.1| 765952 g107847 i0 98.925 0.75 93 1 75 0 132 224 2345155 2345247 Parachlamydia acanthamoebae UV-7, complete genome blastn 168 167 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
23379090 23379090 PRJNA429937_P_NODE_53479_length_481_cov_3.643805_g35320_i0 PRJNA429937 53479 481 3.643805 17.52670205 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 824 0   NTclustered gi|336478352|emb|FR872580.1| 765952 g35320 i0 98.707 0.964656964656965 464 6 96 0 1 464 985484 985021 Parachlamydia acanthamoebae UV-7, complete genome blastn 464 824 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
23379846 23379846 PRJNA429937_P_NODE_96119_length_314_cov_2.217544_g73522_i0 PRJNA429937 96119 314 2.217544 6.96308816 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 355 2e-93   NTclustered gi|336478352|emb|FR872580.1| 765952 g73522 i0 99.487 0.621019108280255 195 1 62 0 120 314 1840468 1840662 Parachlamydia acanthamoebae UV-7, complete genome blastn 195 355 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
24653923 24653923 PRJNA429937_P_NODE_9240_length_1182_cov_5.379011_g5424_i0 PRJNA429937 9240 1182 5.379011 63.57991002 Candidatus Rhabdochlamydia porcellionis 225148 Bacteria Bacteria 2128 0   NTclustered gi|2082223669|gb|CP075585.1| 225148 g5424 i0 99.322 1.99746192893401 1180 1 99 4 1 1174 1383723 1384901 Candidatus Rhabdochlamydia porcellionis strain 15C chromosome, complete genome blastn 2361 2128 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae Candidatus Rhabdochlamydia Candidatus Rhabdochlamydia porcellionis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;