RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA429937" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA429937 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14454799 14454799 PRJNA429937_P_NODE_136972_length_210_cov_217.917127_g114345_i0 PRJNA429937 136972 210 217.917127 457.6259667 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 167 6.31e-37   NTclustered gi|2874253701|emb|OY969427.1| 157466 g114345 i0 81.517 179.87619047619 211 32 99 6 1 209 3407374 3407579 MAG: uncultured Armatimonadetes bacterium isolate MFD09671.bin.1.19 genome assembly, chromosome: 1 blastn 37774 167 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
24653470 24653470 PRJNA429937_P_NODE_66420_length_417_cov_15.489691_g45466_i0 PRJNA429937 66420 417 15.489691 64.59201147 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 466 1.2099999999999997e-126   NTclustered gi|375271370|gb|JQ648819.1| 157466 g45466 i0 95.548 96.8057553956834 292 12 98 1 1 291 20 311 Uncultured Armatimonadetes bacterium clone PBL2-24 16S ribosomal RNA gene, partial sequence blastn 40368 466 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;