RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA429937" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA429937 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7465796 7465796 PRJNA429937_P_NODE_77766_length_373_cov_220.651163_g55507_i0 PRJNA429937 77766 373 220.651163 823.02883799 Bacillati 1783272 Bacteria Bacteria 505 2.2699999999999991e-138   NTclustered gi|823651831|gb|KP400455.1| 34034 g55507 i0 91.553 98.9463806970509 367 30 98 1 1 366 208 574 Uncultured delta proteobacterium clone SS42 16S ribosomal RNA gene, partial sequence blastn 36907 510 0.990196078431373 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
22764725 22764725 PRJNA429937_P_NODE_85738_length_347_cov_3.487421_g63202_i0 PRJNA429937 85738 347 3.487421 12.10135087 root 1 Root_unresolved Root_unresolved 435 2.7900000000000003e-117   NTclustered gi|1139283245|emb|LT697265.1| 34034 g63202 i0 98.78 79.0201729106628 246 0 70 2 105 347 746 501 uncultured delta proteobacterium partial 16S rRNA gene, isolate 10T_22683 blastn 27420 435 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;