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contig_metadata

27 rows where analysis = "blastn", bioproject = "PRJNA429937" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 27 ✖

bioproject 1

  • PRJNA429937 · 27 ✖

analysis 1

  • blastn · 27 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1700783 1700783 PRJNA429937_P_NODE_139302_length_206_cov_305.683616_g116675_i0 PRJNA429937 139302 206 305.683616 629.70824896 Desmochloris halophila 138176 Plants Plants 291 3.5099999999999993e-74   NTclustered gi|371782086|emb|HE610118.1| 138176 g116675 i0 100 76.3300970873786 157 0 100 0 50 206 2376 2532 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 15724 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
1701907 1701907 PRJNA429937_P_NODE_59422_length_450_cov_2.812352_g39875_i0 PRJNA429937 59422 450 2.812352 12.655584 Chlamydomonas reinhardtii 3055 Plants Plants 52.8 0.044   NTclustered gi|2082264035|ref|XM_043069699.1| 3055 g39875 i0 100 0.0622222222222222 28 0 6 0 189 216 4114 4087 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_13g587800v5), mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
2976501 2976501 PRJNA429937_P_NODE_126583_length_232_cov_3529.881773_g103956_i0 PRJNA429937 126583 232 3529.881773 8189.32571336 Chlamydomonas rapa 51689 Plants Plants 322 1.43e-83   NTclustered gi|15281663|gb|AF395503.1| 51689 g103956 i0 92.241 100.297413793103 232 10 99 7 4 232 2034 1808 Chlamydomonas rapa strain SAG 78.72 voucher SAG:78.72 26S ribosomal RNA gene, partial sequence blastn 23269 322 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas rapa
4253585 4253585 PRJNA429937_P_NODE_37304_length_591_cov_18.355872_g23340_i0 PRJNA429937 37304 591 18.355872 108.48320352 Chlamydomonas reinhardtii 3055 Plants Plants 99 7.4e-16   NTclustered gi|2082242172|ref|XM_043060794.1| 3055 g23340 i0 84.314 0.17258883248731 102 14 17 2 126 226 96 196 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g166300v5), mRNA blastn 102 99 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
4915482 4915482 PRJNA429937_P_NODE_150704_length_179_cov_3.493333_g128077_i0 PRJNA429937 150704 179 3.493333 6.25306607 Trebouxia 13786 Plants Plants 303 3.79e-78   NTclustered gi|2105091|emb|Z95384.1| 53267 g128077 i0 97.207 83.5418994413408 179 5 100 0 1 179 553 375 T.jamesii 26S rRNA gene blastn 14954 303 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia jamesii
5529591 5529591 PRJNA429937_P_NODE_135345_length_213_cov_589.744565_g112718_i0 PRJNA429937 135345 213 589.744565 1256.15592345 uncultured Apatococcus 1229086 Plants Plants 377 2.72e-100   NTclustered gi|1031961068|gb|KX025109.1| 1229086 g112718 i0 98.592 99.4600938967136 213 3 100 0 1 213 1271 1483 Uncultured Apatococcus clone GOGs_K08 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence blastn 21185 377 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Apatococcus
5531255 5531255 PRJNA429937_P_NODE_88045_length_339_cov_2075.103226_g65479_i0 PRJNA429937 88045 339 2075.103226 7034.59993614 Desmochloris sp. 3111645 Plants Plants 422 2.12e-113   NTclustered gi|2644500053|gb|PP079691.1| 3111645 g65479 i0 89.086 100.743362831858 339 37 100 0 1 339 1077 739 Desmochloris sp. isolate C7 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 34152 422 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris sp.
8080594 8080594 PRJNA429937_P_NODE_70107_length_402_cov_2111.399464_g48574_i0 PRJNA429937 70107 402 2111.399464 8487.82584528 uncultured Trebouxia photobiont 285713 Plants Plants 614 3.9199999999999996e-171   NTclustered gi|1273623725|gb|KY033354.1| 285713 g48574 i0 95.128 93.1492537313433 390 17 97 2 4 391 6638 6249 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 37446 614 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
8740545 8740545 PRJNA429937_P_NODE_65047_length_424_cov_1.270886_g44349_i0 PRJNA429937 65047 424 1.270886 5.38855664 Chlamydomonadales 3042 Plants Plants 272 2.8799999999999993e-68   NTclustered gi|2082237163|ref|XM_043058766.1| 3055 g44349 i0 88.444 29.5377358490566 225 26 53 0 98 322 175 399 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g039250v5), mRNA blastn 12524 272 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
8740558 8740558 PRJNA429937_P_NODE_68307_length_409_cov_4385.139474_g47045_i0 PRJNA429937 68307 409 4385.139474 17935.22044866 Chlamydomonadales 3042 Plants Plants 636 8.519999999999998e-178   NTclustered gi|33945399|gb|AY206708.1| 179866 g47045 i0 94.84 99.6723716381418 407 21 99 0 1 407 1836 1430 Heterochlamydomonas inaequalis UTEX 1705 28S ribosomal RNA gene, partial sequence blastn 40766 641 0.992199687987519 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Heterochlamydomonas Heterochlamydomonas inaequalis
11905327 11905327 PRJNA429937_P_NODE_3550_length_1741_cov_5.301986_g2099_i0 PRJNA429937 3550 1741 5.301986 92.30757626 Chlamydomonas reinhardtii 3055 Plants Plants 1378 0   NTclustered gi|2082261551|ref|XM_043068671.1| 3055 g2099 i0 82.169 14.0987937966686 1632 265 93 25 95 1713 3310 1692 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g537200v5), mRNA blastn 24546 1378 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
13180659 13180659 PRJNA429937_P_NODE_5451_length_1483_cov_5.022008_g3168_i1 PRJNA429937 5451 1483 5.022008 74.47637864 Chlamydomonas reinhardtii 3055 Plants Plants 586 3.379999999999999e-162   NTclustered gi|2082242608|ref|XM_043060966.1| 3055 g3168 i1 83.981 0.4409979770735 618 91 41 8 859 1472 2014 1401 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g176400v5), mRNA blastn 654 586 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
15729637 15729637 PRJNA429937_P_NODE_5373_length_1492_cov_5.058783_g3168_i0 PRJNA429937 5373 1492 5.058783 75.47704236 Chlamydomonas reinhardtii 3055 Plants Plants 586 3.399999999999999e-162   NTclustered gi|2082242608|ref|XM_043060966.1| 3055 g3168 i0 83.981 0.438337801608579 618 91 41 8 12 625 1401 2014 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g176400v5), mRNA blastn 654 586 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
17003226 17003226 PRJNA429937_P_NODE_142634_length_201_cov_2.220930_g120007_i0 PRJNA429937 142634 201 2.22093 4.4640693 Chlamydomonas reinhardtii 3055 Plants Plants 137 4.69e-28   NTclustered gi|2082237163|ref|XM_043058766.1| 3055 g120007 i0 94.444 0.895522388059702 90 4 44 1 20 108 760 849 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g039250v5), mRNA blastn 180 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
17004176 17004176 PRJNA429937_P_NODE_49874_length_502_cov_2.334038_g32604_i0 PRJNA429937 49874 502 2.334038 11.71687076 Ettlia sp. YC001 1191503 Plants Plants 82.4 6.26e-11   NTclustered gi|1815409451|gb|MN184712.1| 1191503 g32604 i0 91.667 0.260956175298805 60 4 12 1 47 105 583 642 Ettlia sp. YC001 stress-related chlorophyll a/b binding protein 2 (LhcsR) mRNA, complete cds blastn 131 82.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales   Ettlia Ettlia sp. YC001
17004468 17004468 PRJNA429937_P_NODE_64854_length_424_cov_9.002532_g44191_i0 PRJNA429937 64854 424 9.002532 38.17073568 Chloroidium ellipsoideum 63676 Plants Plants 342 2.16e-89   NTclustered gi|1169296931|gb|KY364701.1| 63676 g44191 i0 83.554 56.5141509433962 377 51 88 10 1 373 5381 5750 Chloroidium ellipsoideum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 23962 342 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
18277650 18277650 PRJNA429937_P_NODE_152035_length_174_cov_2.924138_g129408_i0 PRJNA429937 152035 174 2.924138 5.08800012 Pleodorina indica 51710 Plants Plants 132 1.83e-26   NTclustered gi|2089722823|gb|MZ446080.1| 51710 g129408 i0 80.46 2.36206896551724 174 32 99 2 2 174 407 235 Pleodorina indica strain NIES-736 hypothetical protein mRNA, partial cds blastn 411 132 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Pleodorina Pleodorina indica
18279103 18279103 PRJNA429937_P_NODE_84335_length_352_cov_2.343653_g61830_i0 PRJNA429937 84335 352 2.343653 8.24965856 Pleodorina indica 51710 Plants Plants 135 3.21e-27   NTclustered gi|2089722823|gb|MZ446080.1| 51710 g61830 i0 78.082 2.8125 219 45 62 3 135 351 190 407 Pleodorina indica strain NIES-736 hypothetical protein mRNA, partial cds blastn 990 135 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Pleodorina Pleodorina indica
18939180 18939180 PRJNA429937_P_NODE_68795_length_407_cov_4532.875661_g47450_i0 PRJNA429937 68795 407 4532.875661 18448.80394027 Heterochlamydomonas 179865 Plants Plants 702 0   NTclustered gi|33945399|gb|AY206708.1| 179866 g47450 i0 97.789 100.230958230958 407 9 100 0 1 407 1836 1430 Heterochlamydomonas inaequalis UTEX 1705 28S ribosomal RNA gene, partial sequence blastn 40794 702 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Heterochlamydomonas Heterochlamydomonas inaequalis
19551451 19551451 PRJNA429937_P_NODE_106876_length_282_cov_214.000000_g84256_i0 PRJNA429937 106876 282 214 603.48 Desmochloris halophila 138176 Plants Plants 289 1.82e-73   NTclustered gi|371782086|emb|HE610118.1| 138176 g84256 i0 100 63.4007092198582 156 0 73 0 1 156 2532 2377 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 17879 289 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
19551963 19551963 PRJNA429937_P_NODE_156916_length_156_cov_425.614173_g134289_i0 PRJNA429937 156916 156 425.614173 663.95810988 Desmochloris halophila 138176 Plants Plants 283 4.1899999999999994e-72   NTclustered gi|371782086|emb|HE610118.1| 138176 g134289 i0 99.359 101.160256410256 156 1 100 0 1 156 2377 2532 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 15781 283 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
20827885 20827885 PRJNA429937_P_NODE_20637_length_810_cov_3.138284_g12195_i0 PRJNA429937 20637 810 3.138284 25.4201004 Coccomyxa subellipsoidea 248742 Plants Plants 560 1.09e-154   NTclustered gi|545367280|ref|XM_005648425.1| 574566 g12195 i0 85.932 57.8925925925926 526 72 65 2 224 748 525 1 Coccomyxa subellipsoidea C-169 ribosomal protein S9 component of cytosolic 80S ribosome and 40S small subunit partial mRNA blastn 46893 560 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
20828947 20828947 PRJNA429937_P_NODE_7037_length_1327_cov_10.564715_g4147_i0 PRJNA429937 7037 1327 10.564715 140.19376805 Neocystis brevis 1065496 Plants Plants 1314 0   NTclustered gi|723456865|ref|NC_025535.1| 1065496 g4147 i0 85.28 93.4453654860588 1284 177 96 8 15 1289 179150 177870 Neocystis brevis culture-collection CAUP<CZH>:D802 chloroplast, complete genome blastn 124002 1314 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Radiococcaceae Neocystis Neocystis brevis
22102863 22102863 PRJNA429937_P_NODE_23818_length_752_cov_12.629322_g14214_i0 PRJNA429937 23818 752 12.629322 94.97250144 Chlamydomonas reinhardtii 3055 Plants Plants 213 3.27e-50   NTclustered gi|18179|emb|X13496.1| 3055 g14214 i0 80.903 0.765957446808511 288 40 38 6 127 414 67 339 C.reinhardhii mRNA for 8.1 kd P30 protein of photosystem I blastn 576 213 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
22764239 22764239 PRJNA429937_P_NODE_117918_length_253_cov_336.285714_g95292_i0 PRJNA429937 117918 253 336.285714 850.80285642 Chlorophyta 3041 Plants Plants 451 1.94e-122   NTclustered gi|1518373083|gb|MK201746.1| 152768 g95292 i0 98.814 100.02766798419 253 3 100 0 1 253 1023 771 Diplosphaera chodatii strain KZ-26-5 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 25307 451 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Diplosphaera Diplosphaera chodatii
24039146 24039146 PRJNA429937_P_NODE_149039_length_186_cov_2.280255_g126412_i0 PRJNA429937 149039 186 2.280255 4.2412743 Chlorophyta 3041 Plants Plants 315 1.84e-81   NTclustered gi|723456786|ref|NC_025525.1| 3171 g126412 i0 97.297 111.661290322581 185 5 99 0 2 186 51228 51412 Myrmecia israelensis culture-collection UTEX:1181 chloroplast, complete genome blastn 20769 316 0.996835443037975 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia israelensis
24652354 24652354 PRJNA429937_P_NODE_153540_length_168_cov_69.935252_g130913_i0 PRJNA429937 153540 168 69.935252 117.49122336 Koliella longiseta 33092 Plants Plants 222 1.02e-53   NTclustered gi|371782094|emb|HE610126.1| 33092 g130913 i0 90.476 100.827380952381 168 16 100 0 1 168 4936 4769 Koliella longiseta 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 470-1 blastn 16939 222 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;