RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA421571" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA421571 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4250988 4250988 PRJNA421571_P_NODE_75984_length_287_cov_1.079439_g73435_i0 PRJNA421571 75984 287 1.079439 3.09798993 Pristionchus bulgaricus 1486442 Nematoda Nematoda 158 5.47e-34   NTclustered gi|610559301|gb|KJ395505.1| 1486442 g73435 i0 78.601 29.9128919860627 243 46 84 5 48 287 402 163 Pristionchus bulgaricus isolate sp18 ribosomal protein (rpl-1) gene, partial cds blastn 8585 158 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus bulgaricus
13176713 13176713 PRJNA421571_P_NODE_41051_length_457_cov_0.963542_g38503_i0 PRJNA421571 41051 457 0.963542 4.40338694 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.044   NTclustered gi|690019446|emb|LM526961.1| 174720 g38503 i0 100 0.306345733041575 28 0 6 0 99 126 590 617 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0001301 blastn 140 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
13176940 13176940 PRJNA421571_P_NODE_48571_length_399_cov_1.996933_g46023_i0 PRJNA421571 48571 399 1.996933 7.96776267 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.038   NTclustered gi|675503|gb|L39939.1|CELCPR6G 6239 g46023 i0 100 0.350877192982456 28 0 7 0 280 307 1117 1090 Caenorhabditis elegans cathepsin B-like cysteine proteinase (cpr-6) gene, complete cds blastn 140 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
15725408 15725408 PRJNA421571_P_NODE_34413_length_528_cov_1.397802_g31873_i0 PRJNA421571 34413 528 1.397802 7.38039456 Koerneria sp. RS1982 358044 Nematoda Nematoda 318 4.629999999999998e-82   NTclustered gi|150982035|gb|EF634606.1| 358044 g31873 i0 82.133 40.5113636363636 375 63 71 2 102 474 393 21 Koerneria sp. RS1982 large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 21390 318 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Koerneria Koerneria sp. RS1982
16999872 16999872 PRJNA421571_P_NODE_26174_length_657_cov_10.030822_g23696_i0 PRJNA421571 26174 657 10.030822 65.90250054 Oigolaimella sp. VS-2014 1538701 Nematoda Nematoda 307 1.26e-78   NTclustered gi|675119001|gb|KJ877380.1| 1538701 g23696 i0 82.143 13.8006088280061 364 59 55 6 79 439 36 396 Oigolaimella sp. VS-2014 strain RS9010 large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 9067 307 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Oigolaimella Oigolaimella sp. VS-2014
22100613 22100613 PRJNA421571_P_NODE_80238_length_276_cov_1.778325_g77689_i0 PRJNA421571 80238 276 1.778325 4.908177 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 207 5.12e-49   NTclustered gi|567773431|gb|KF739066.1| 6326 g77689 i0 82.7 27.1847826086957 237 37 85 4 42 276 266 32 Bursaphelenchus xylophilus isolate ZJZS FTT-2 protein mRNA, complete cds blastn 7503 207 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;