RNAquarium Metadata Server
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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA421571" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 14 ✖

tax_kingdom 1

bioproject 1

  • PRJNA421571 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
422708 422708 PRJNA421571_P_NODE_32001_length_560_cov_1.470226_g29468_i0 PRJNA421571 32001 560 1.470226 8.2332656 Capillovirus mali 28347 Viruses Viruses 556 9.59e-154   NTclustered gi|2700566195|gb|ON820679.1| 33759 g29468 i0 84.74 25.8017857142857 557 83 99 2 3 558 4786 5341 Citrus tatter leaf virus isolate HB-WG2, complete genome blastn 14449 556 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
1698270 1698270 PRJNA421571_P_NODE_56142_length_356_cov_1.823322_g53593_i0 PRJNA421571 56142 356 1.823322 6.49102632 Capillovirus mali 28347 Viruses Viruses 396 1.35e-105   NTclustered gi|2644590385|gb|PP003242.1| 28347 g53593 i0 86.761 1.99157303370787 355 47 99 0 2 356 2508 2154 Capillovirus mali isolate ZN-1, complete genome blastn 709 396 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
2974264 2974264 PRJNA421571_P_NODE_61623_length_333_cov_1.473077_g59074_i0 PRJNA421571 61623 333 1.473077 4.90534641 Capillovirus mali 28347 Viruses Viruses 429 1.2399999999999996e-115   NTclustered gi|2700566186|gb|ON820676.1| 33759 g59074 i0 90.03 99.4024024024024 331 33 99 0 3 333 5250 5580 Citrus tatter leaf virus isolate HN-HMR, complete genome blastn 33101 429 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
9352509 9352509 PRJNA421571_P_NODE_95988_length_248_cov_1.320000_g93439_i0 PRJNA421571 95988 248 1.32 3.2736 Capillovirus mali 28347 Viruses Viruses 250 7.41e-62   NTclustered gi|1824676484|gb|MK481972.1| 28347 g93439 i0 85.246 1.96774193548387 244 35 98 1 6 248 2414 2171 Apple stem grooving virus isolate Tibet-4, complete genome blastn 488 250 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
10626664 10626664 PRJNA421571_P_NODE_34889_length_521_cov_6.390625_g32348_i0 PRJNA421571 34889 521 6.390625 33.29515625 Citrivirus citri 3427970 Viruses Viruses 636 1.1099999999999996e-177   NTclustered gi|1560019402|gb|MH427034.1| 129141 g32348 i0 88.783 69.1132437619962 526 50 100 9 1 521 8785 8264 Citrus leaf blotch virus isolate HZ, complete genome blastn 36008 636 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Citrivirus Citrivirus citri
11289223 11289223 PRJNA421571_P_NODE_58289_length_346_cov_2.725275_g55740_i0 PRJNA421571 58289 346 2.725275 9.4294515 Capillovirus 12174 Viruses Viruses 556 5.69e-154   NTclustered gi|1249614030|dbj|LC184610.1| 28347 g55740 i0 95.665 99.7543352601156 346 15 100 0 1 346 6146 6491 Apple stem grooving virus genomic RNA, complete genome, isolate: N297 blastn 34515 556 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
11901797 11901797 PRJNA421571_P_NODE_41290_length_454_cov_4.013123_g38742_i0 PRJNA421571 41290 454 4.013123 18.21957842 Citrus leaf blotch virus Ac 2507947 Viruses Viruses 562 1.64e-155   NTclustered gi|1561006372|gb|MK135436.1| 2507947 g38742 i0 88.987 55.511013215859 454 50 100 0 1 454 8158 7705 Citrus leaf blotch virus Ac isolate MX, complete genome blastn 25202 562 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae   Citrus leaf blotch virus Ac
13838920 13838920 PRJNA421571_P_NODE_18011_length_856_cov_3.282248_g15864_i0 PRJNA421571 18011 856 3.282248 28.09604288 Citrivirus 699166 Viruses Viruses 693 0   NTclustered gi|2177953987|gb|OK513344.1| 129141 g15864 i0 82.266 38.9614485981308 812 134 95 8 5 814 7488 6685 MAG: Citrus leaf blotch virus isolate ZZ25-1, partial genome blastn 33351 695 0.997122302158273 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Citrivirus Citrivirus citri
14453150 14453150 PRJNA421571_P_NODE_87092_length_261_cov_1.143617_g84543_i0 PRJNA421571 87092 261 1.143617 2.98484037 Capillovirus mali 28347 Viruses Viruses 287 5.990000000000001e-73   NTclustered gi|2451393036|gb|OQ263371.1| 28347 g84543 i0 86.873 49.7049808429119 259 31 99 3 2 259 3640 3896 Capillovirus mali isolate K polyprotein gene, partial cds; and serine protease gene, complete cds blastn 12973 287 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
15725022 15725022 PRJNA421571_P_NODE_22393_length_737_cov_2.277108_g20006_i0 PRJNA421571 22393 737 2.277108 16.78228596 Capillovirus mali 28347 Viruses Viruses 1157 0   NTclustered gi|1614056864|dbj|LC475148.1| 28347 g20006 i0 94.986 99.8168249660787 738 35 100 2 1 737 6425 5689 Apple stem grooving virus ASGV_SG genomic RNA, complete genome blastn 73565 1157 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
17001485 17001485 PRJNA421571_P_NODE_82454_length_271_cov_1.530303_g79905_i0 PRJNA421571 82454 271 1.530303 4.14712113 Capillovirus mali 28347 Viruses Viruses 431 2.729999999999999e-116   NTclustered gi|971459847|emb|LN901436.1| 28347 g79905 i0 95.865 99.4575645756458 266 11 98 0 6 271 322 57 Apple stem grooving virus CP gene for coat protein, isolate HPHF15 blastn 26953 431 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
18275140 18275140 PRJNA421571_P_NODE_58275_length_346_cov_8.333333_g55726_i0 PRJNA421571 58275 346 8.333333 28.83333218 Peony associated anulavirus 2800953 Viruses Viruses 582 9.389999999999996e-162   NTclustered gi|1898324219|gb|MN253485.1| 2800953 g55726 i0 97.118 10 347 7 99 2 1 344 1918 1572 Peony associated anulavirus strain BJ segment RNA1 replication protein 1a gene, complete cds blastn 3460 582 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Anulavirus Peony associated anulavirus
20824777 20824777 PRJNA421571_P_NODE_42717_length_442_cov_1.452575_g40169_i0 PRJNA421571 42717 442 1.452575 6.4203815 Capillovirus mali 28347 Viruses Viruses 488 2.7499999999999995e-133   NTclustered gi|1614056864|dbj|LC475148.1| 28347 g40169 i0 86.758 18.8438914027149 438 58 99 0 1 438 3821 3384 Apple stem grooving virus ASGV_SG genomic RNA, complete genome blastn 8329 488 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
22099784 22099784 PRJNA421571_P_NODE_5058_length_1623_cov_1.809677_g4263_i0 PRJNA421571 5058 1623 1.809677 29.37105771 Capillovirus mali 28347 Viruses Viruses 1432 0   NTclustered gi|1614056864|dbj|LC475148.1| 28347 g4263 i0 83.42 94.3173136167591 1544 255 95 1 80 1623 4901 3359 Apple stem grooving virus ASGV_SG genomic RNA, complete genome blastn 153077 1432 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;