RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA421571" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA421571 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1698386 1698386 PRJNA421571_P_NODE_59882_length_340_cov_1.516854_g57333_i0 PRJNA421571 59882 340 1.516854 5.1573036 Cavenderia fasciculata 261658 Evosea other_Eukaryota 298 3.74e-76   NTclustered gi|470243687|ref|XM_004355523.1| 261658 g57333 i0 82.544 91.4970588235294 338 59 99 0 1 338 674 1011 Cavenderia fasciculata actin (act7), partial mRNA blastn 31109 298 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
5525522 5525522 PRJNA421571_P_NODE_102205_length_244_cov_0.900585_g99656_i0 PRJNA421571 102205 244 0.900585 2.1974274 Fuligo septica 159720 Evosea other_Eukaryota 451 1.86e-122   NTclustered gi|1275019471|gb|MG429795.1| 159720 g99656 i0 100 93.655737704918 244 0 100 0 1 244 13 256 Fuligo septica isolate s31748 small subunit ribosomal RNA gene, partial sequence blastn 22852 451 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
19548858 19548858 PRJNA421571_P_NODE_41716_length_451_cov_1.010582_g39168_i0 PRJNA421571 41716 451 1.010582 4.55772482 Dictyostelium purpureum 5786 Evosea other_Eukaryota 52.8 0.044   NTclustered gi|330819005|ref|XM_003291509.1| 5786 g39168 i0 100 0.0620842572062084 28 0 6 0 320 347 892 919 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_156159), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
23376505 23376505 PRJNA421571_P_NODE_9139_length_1257_cov_2.277872_g7818_i0 PRJNA421571 9139 1257 2.277872 28.63285104 Dictyostelium discoideum 44689 Evosea other_Eukaryota 933 0   NTclustered gi|66813933|ref|XM_636054.1| 352472 g7818 i0 81.891 89.357199681782 1121 189 89 14 60 1173 18 1131 Dictyostelium discoideum AX4 hypothetical protein (act7) mRNA, complete cds blastn 112322 933 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;