RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA421571" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA421571 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
424494 424494 PRJNA421571_P_NODE_98641_length_246_cov_1.780347_g96092_i0 PRJNA421571 98641 246 1.780347 4.37965362 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 176 1.26e-39   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g96092 i0 85.246 25.7235772357724 183 14 70 5 73 243 33191 33372 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 6328 176 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
2974127 2974127 PRJNA421571_P_NODE_56143_length_356_cov_1.823322_g53594_i0 PRJNA421571 56143 356 1.823322 6.49102632 Platyamoeba placida 3454475 Discosea other_Eukaryota 508 1.66e-139   NTclustered gi|33946348|gb|AY294153.1| 197527 g53594 i0 92.416 97.6797752808989 356 27 100 0 1 356 699 1054 Platyamoeba placida actin mRNA, partial cds blastn 34774 508 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
6801104 6801104 PRJNA421571_P_NODE_54846_length_363_cov_1.103448_g52297_i0 PRJNA421571 54846 363 1.103448 4.00551624 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 207 6.94e-49   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g52297 i0 82.906 8.09917355371901 234 36 64 3 121 352 232 1 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 2940 207 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9350682 9350682 PRJNA421571_P_NODE_29408_length_598_cov_8.057143_g26891_i0 PRJNA421571 29408 598 8.057143 48.18171514 Vexillifera multispinosa 1105342 Discosea other_Eukaryota 534 4.8199999999999997e-147   NTclustered gi|354720322|gb|HQ687481.1| 1105342 g26891 i0 84.507 61.8729096989967 568 58 100 23 1 548 606 49 Vexillifera multispinosa strain P124 small subunit ribosomal RNA gene, partial sequence blastn 37000 534 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera multispinosa
11901648 11901648 PRJNA421571_P_NODE_36290_length_505_cov_1.763889_g33747_i0 PRJNA421571 36290 505 1.763889 8.90763945 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 477 6.879999999999998e-130   NTclustered gi|470447963|ref|XM_004340066.1| 1257118 g33747 i0 86.301 85.6752475247525 438 60 87 0 12 449 1281 844 Acanthamoeba castellanii str. Neff ATP synthase, putative (ACA1_367940), partial mRNA blastn 43266 477 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14451521 14451521 PRJNA421571_P_NODE_30072_length_588_cov_4.607767_g27550_i0 PRJNA421571 30072 588 4.607767 27.09366996 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 283 1.89e-71   NTclustered gi|470442906|ref|XM_004339540.1| 1257118 g27550 i0 84.859 20.6343537414966 284 39 48 4 90 371 21 302 Acanthamoeba castellanii str. Neff 60S ribosomal protein, putative (ACA1_063390), partial mRNA blastn 12133 283 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16999746 16999746 PRJNA421571_P_NODE_22714_length_730_cov_2.971081_g20314_i0 PRJNA421571 22714 730 2.971081 21.6888913 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 411 1.0500000000000001e-109   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g20314 i0 83.153 36.5986301369863 463 65 62 12 265 720 32267 32723 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 26717 411 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
17000404 17000404 PRJNA421571_P_NODE_42834_length_441_cov_1.573370_g40286_i0 PRJNA421571 42834 441 1.57337 6.9385617 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 193 2.41e-44   NTclustered gi|470508804|ref|XM_004349582.1| 1257118 g40286 i0 76.44 22.5442176870748 382 74 85 13 1 377 658 1028 Acanthamoeba castellanii str. Neff calreticulin, putative (ACA1_142350), partial mRNA blastn 9942 193 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18273736 18273736 PRJNA421571_P_NODE_14795_length_967_cov_2.130872_g12884_i0 PRJNA421571 14795 967 2.130872 20.60553224 Paramoeba branchiphila 308475 Discosea other_Eukaryota 917 0   NTclustered gi|226347442|gb|FJ807261.1| 308475 g12884 i0 86.538 68.8200620475698 832 110 86 2 126 956 1202 372 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 66549 917 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
20826086 20826086 PRJNA421571_P_NODE_91917_length_251_cov_0.865169_g89368_i0 PRJNA421571 91917 251 0.865169 2.17157419 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 132 2.84e-26   NTclustered gi|470417341|ref|XM_004336934.1| 1257118 g89368 i0 85.156 0.50996015936255 128 19 51 0 110 237 1581 1454 Acanthamoeba castellanii str. Neff ATPase, AAA domain containing protein (ACA1_011280), partial mRNA blastn 128 132 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24650560 24650560 PRJNA421571_P_NODE_87460_length_260_cov_1.331551_g84911_i0 PRJNA421571 87460 260 1.331551 3.4620326 Paravannella minima 1443144 Discosea other_Eukaryota 108 4.99e-19   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g84911 i0 94.286 3.02307692307692 70 4 27 0 37 106 2789 2858 Paravannella minima mitochondrion, complete genome blastn 786 108 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;