RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA421571" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA421571 · 14 ✖

analysis 1

  • blastn · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1698894 1698894 PRJNA421571_P_NODE_79362_length_278_cov_2.575610_g76813_i0 PRJNA421571 79362 278 2.57561 7.1601958 Fimicolochytrium jonesii 1396493 Fungi Fungi 183 8.7e-42   NTclustered gi|2432094869|ref|XM_053071832.1| 1396493 g76813 i0 79.211 2.03237410071942 279 46 98 10 1 273 428 156 Fimicolochytrium jonesii ribosomal protein S2, flavodoxin-like domain-containing protein (EV422DRAFT_551381), partial mRNA blastn 565 183 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
8738458 8738458 PRJNA421571_P_NODE_31887_length_561_cov_4.225410_g29354_i0 PRJNA421571 31887 561 4.22541 23.7045501 Fungi 4751 Fungi Fungi 206 4.01e-48   NTclustered gi|2432143272|ref|XM_053110602.1| 110093 g29354 i0 87.931 28.2923351158645 174 21 31 0 108 281 177 350 Polychytrium aggregatum 40S ribosomal protein S28 (BJ171DRAFT_500751), mRNA blastn 15872 206 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
9351239 9351239 PRJNA421571_P_NODE_46388_length_414_cov_1.592375_g43840_i0 PRJNA421571 46388 414 1.592375 6.5924325 Synchytrium microbalum 1806994 Fungi Fungi 73.1 3.06e-8   NTclustered gi|1759154154|ref|XM_031169692.1| 1806994 g43840 i0 85.714 0.888888888888889 70 8 17 2 132 200 600 532 Synchytrium microbalum uncharacterized protein (SmJEL517_g03764), partial mRNA blastn 368 73.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
14450729 14450729 PRJNA421571_P_NODE_102412_length_244_cov_0.900585_g99863_i0 PRJNA421571 102412 244 0.900585 2.1974274 Polychytrium aggregatum 110093 Fungi Fungi 124 4.599999999999999e-24   NTclustered gi|2432150522|ref|XM_053107685.1| 110093 g99863 i0 80 2.52049180327869 175 30 70 5 18 189 581 409 Polychytrium aggregatum pyridoxal-dependent decarboxylase (BJ171DRAFT_424751), partial mRNA blastn 615 124 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
14452083 14452083 PRJNA421571_P_NODE_47352_length_407_cov_2.652695_g44804_i0 PRJNA421571 47352 407 2.652695 10.79646865 Polychytrium aggregatum 110093 Fungi Fungi 272 2.7499999999999993e-68   NTclustered gi|2432149348|ref|XM_053111166.1| 110093 g44804 i0 79.293 31.3783783783784 396 76 97 6 15 407 102 494 Polychytrium aggregatum ribosomal protein S19-domain-containing protein (BJ171DRAFT_506928), mRNA blastn 12771 272 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
14452373 14452373 PRJNA421571_P_NODE_58052_length_347_cov_3.164234_g55503_i0 PRJNA421571 58052 347 3.164234 10.97989198 Polychytrium aggregatum 110093 Fungi Fungi 182 4.02e-41   NTclustered gi|2432149348|ref|XM_053111166.1| 110093 g55503 i0 80.591 4.21037463976945 237 45 68 1 83 318 292 528 Polychytrium aggregatum ribosomal protein S19-domain-containing protein (BJ171DRAFT_506928), mRNA blastn 1461 182 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
18274947 18274947 PRJNA421571_P_NODE_51795_length_379_cov_1.856209_g49246_i0 PRJNA421571 51795 379 1.856209 7.03503211 Spizellomyces punctatus 109760 Fungi Fungi 342 1.9099999999999994e-89   NTclustered gi|1027028346|ref|XM_016756817.1| 645134 g49246 i0 83.934 72.5435356200528 361 54 95 4 1 359 1804 1446 Spizellomyces punctatus DAOM BR117 ADP,ATP carrier protein 1, mitochondrial, variant (SPPG_08669), partial mRNA blastn 27494 342 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
19548752 19548752 PRJNA421571_P_NODE_38376_length_482_cov_3.396088_g35829_i0 PRJNA421571 38376 482 3.396088 16.36914416 Polychytrium aggregatum 110093 Fungi Fungi 228 7.269999999999999e-55   NTclustered gi|2432159776|ref|XM_053111801.1| 110093 g35829 i0 81.588 49.7489626556017 277 49 57 2 113 388 393 118 Polychytrium aggregatum ribosomal protein S8e/ribosomal biogenesis NSA2 (BJ171DRAFT_514033), mRNA blastn 23979 228 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
20825066 20825066 PRJNA421571_P_NODE_52657_length_374_cov_2.368771_g50108_i0 PRJNA421571 52657 374 2.368771 8.85920354 Polychytrium aggregatum 110093 Fungi Fungi 172 2.62e-38   NTclustered gi|2432157454|ref|XM_053111646.1| 110093 g50108 i0 81.106 22.3716577540107 217 39 58 2 87 302 716 931 Polychytrium aggregatum WD40-repeat-containing domain protein (BJ171DRAFT_512219), mRNA blastn 8367 172 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
20825655 20825655 PRJNA421571_P_NODE_74837_length_289_cov_3.208333_g72288_i0 PRJNA421571 74837 289 3.208333 9.27208237 Polychytrium aggregatum 110093 Fungi Fungi 172 1.9699999999999998e-38   NTclustered gi|2432170888|ref|XM_053112523.1| 110093 g72288 i0 81.69 4.85467128027682 213 33 73 6 70 279 49 258 Polychytrium aggregatum putative 40S ribosomal protein S3 (BJ171DRAFT_522887), mRNA blastn 1403 172 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
22100182 22100182 PRJNA421571_P_NODE_64478_length_323_cov_0.848000_g61929_i0 PRJNA421571 64478 323 0.848 2.73904 Polychytrium aggregatum 110093 Fungi Fungi 250 1e-61   NTclustered gi|2432150950|ref|XM_053107694.1| 110093 g61929 i0 82.796 5.59752321981424 279 48 86 0 34 312 1461 1739 Polychytrium aggregatum elongation factor EF-3 (BJ171DRAFT_424968), partial mRNA blastn 1808 250 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
22100581 22100581 PRJNA421571_P_NODE_79118_length_279_cov_1.490291_g76569_i0 PRJNA421571 79118 279 1.490291 4.15791189 Fimicolochytrium jonesii 1396493 Fungi Fungi 156 1.9e-33   NTclustered gi|2432102556|ref|XM_053065912.1| 1396493 g76569 i0 78.97 13.415770609319 233 45 83 4 1 231 517 287 Fimicolochytrium jonesii thiamine diphosphate-binding protein (EV422DRAFT_276097), mRNA blastn 3743 156 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
23374077 23374077 PRJNA421571_P_NODE_106599_length_241_cov_0.916667_g104050_i0 PRJNA421571 106599 241 0.916667 2.20916747 Polychytrium aggregatum 110093 Fungi Fungi 174 4.4399999999999997e-39   NTclustered gi|2432131389|ref|XM_053109302.1| 110093 g104050 i0 80.973 12.8796680497925 226 37 93 5 19 241 584 362 Polychytrium aggregatum ribosomal protein S3Ae (BJ171DRAFT_487525), mRNA blastn 3104 174 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
24648183 24648183 PRJNA421571_P_NODE_102920_length_243_cov_1.688235_g100371_i0 PRJNA421571 102920 243 1.688235 4.10241105 Polychytrium aggregatum 110093 Fungi Fungi 196 9.56e-46   NTclustered gi|2432155690|ref|XM_053111537.1| 110093 g100371 i0 82.949 1.48148148148148 217 37 89 0 10 226 1137 921 Polychytrium aggregatum mitochondrial carrier domain-containing protein (BJ171DRAFT_511047), mRNA blastn 360 196 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;