RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA421571" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA421571 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6189157 6189157 PRJNA421571_P_NODE_69465_length_305_cov_1.905172_g66916_i0 PRJNA421571 69465 305 1.905172 5.8107746 Acidobacteriaceae 204434 Bacteria Bacteria 564 2.95e-156   NTclustered gi|2304905231|gb|CP073696.1| 2051959 g66916 i0 100 104.603278688525 305 0 100 0 1 305 3199955 3199651 Tunturiibacter lichenicola strain DSM 104462 chromosome, complete genome blastn 31904 564 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Tunturiibacter Tunturiibacter lichenicola
10628320 10628320 PRJNA421571_P_NODE_96609_length_248_cov_0.880000_g94060_i0 PRJNA421571 96609 248 0.88 2.1824 Acidobacteria bacterium Mor1 1660251 Bacteria Bacteria 158 4.62e-34   NTclustered gi|1037405666|gb|CP011806.1| 1660251 g94060 i0 83.908 18.6854838709677 174 19 69 7 19 190 5680132 5679966 Acidobacteria bacterium Mor1 chromosome blastn 4634 158 1 Bacteria Acidobacteriota subdivision 22 Pseudomonadati Acidobacteriota         Acidobacteria bacterium Mor1
19549343 19549343 PRJNA421571_P_NODE_57536_length_350_cov_1.234657_g54987_i0 PRJNA421571 57536 350 1.234657 4.3212995 Terriglobus saanensis 870903 Bacteria Bacteria 52.8 0.033   NTclustered gi|319923767|gb|CP002467.1| 401053 g54987 i0 100 0.08 28 0 8 0 286 313 4098126 4098099 Terriglobus saanensis SP1PR4, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terriglobus Terriglobus saanensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;