RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA421571" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA421571 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5527300 5527300 PRJNA421571_P_NODE_63465_length_326_cov_2.003953_g60916_i0 PRJNA421571 63465 326 2.003953 6.53288678 Thecamonas trahens 529818 Root_unresolved Root_unresolved 226 1.7099999999999994e-54   NTclustered gi|923123284|ref|XM_013899657.1| 461836 g60916 i0 83.951 44.3680981595092 243 31 73 7 15 253 356 118 Thecamonas trahens ATCC 50062 peroxiredoxin (AMSG_08693), mRNA blastn 14464 226 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
9351869 9351869 PRJNA421571_P_NODE_69508_length_305_cov_1.616379_g66959_i0 PRJNA421571 69508 305 1.616379 4.92995595 Thecamonas trahens 529818 Root_unresolved Root_unresolved 65.8 3.65e-6   NTclustered gi|923129980|ref|XM_013903002.1| 461836 g66959 i0 90 0.163934426229508 50 5 16 0 8 57 2584 2633 Thecamonas trahens ATCC 50062 uncharacterized protein (AMSG_11820), partial mRNA blastn 50 65.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
9352098 9352098 PRJNA421571_P_NODE_79108_length_279_cov_1.495146_g76559_i0 PRJNA421571 79108 279 1.495146 4.17145734 Thecamonas trahens 529818 Root_unresolved Root_unresolved 235 2.38e-57   NTclustered gi|923134532|ref|XM_013905278.1| 461836 g76559 i0 82.353 21.1290322580645 272 46 97 2 3 273 1116 846 Thecamonas trahens ATCC 50062 V-type proton ATPase catalytic subunit A (AMSG_02897), partial mRNA blastn 5895 235 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
17001737 17001737 PRJNA421571_P_NODE_92314_length_251_cov_0.865169_g89765_i0 PRJNA421571 92314 251 0.865169 2.17157419 Thecamonas trahens 529818 Root_unresolved Root_unresolved 180 1e-40   NTclustered gi|923123076|ref|XM_013899554.1| 461836 g89765 i0 89.437 63.6334661354582 142 15 57 0 107 248 4180 4039 Thecamonas trahens ATCC 50062 uncharacterized protein (AMSG_12222), partial mRNA blastn 15972 180 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;