RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA416866" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA416866 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2970352 2970352 PRJNA416866_P_NODE_3723_length_344_cov_2.148410_g3580_i0 PRJNA416866 3723 344 2.14841 7.3905304 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 176 1.85e-39   NTclustered gi|675166828|ref|XM_008894051.1| 761204 g3580 i0 83.333 9.26453488372093 192 30 56 2 1 191 1002 812 Phytophthora parasitica INRA-310 V-type H(+)-translocating pyrophosphatase mRNA blastn 3187 176 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
4246692 4246692 PRJNA416866_P_NODE_1484_length_572_cov_31.056751_g1345_i0 PRJNA416866 1484 572 31.056751 177.64461572 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 243 3.12e-59   NTclustered gi|673019759|ref|XM_008865619.1| 157072 g1345 i0 79.05 13.8548951048951 358 71 62 4 113 468 482 127 Aphanomyces invadans 40S ribosomal protein S23 mRNA blastn 7925 243 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
4246711 4246711 PRJNA416866_P_NODE_4524_length_309_cov_6.302419_g4380_i0 PRJNA416866 4524 309 6.302419 19.47447471 Achlya bisexualis 4766 SAR_Eukaryotes SAR_Eukaryotes 248 3.43e-61   NTclustered gi|2289|emb|X59936.1| 4766 g4380 i0 87.156 68.8608414239482 218 28 71 0 90 307 1 218 A.bisexualis gene for actin blastn 21278 248 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya bisexualis
13837221 13837221 PRJNA416866_P_NODE_1751_length_522_cov_2.208243_g1609_i0 PRJNA416866 1751 522 2.208243 11.52702846 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 488 3.2899999999999996e-133   NTclustered gi|9858457|gb|AF085344.1|AF085344 82926 g1609 i0 86.057 85.1111111111111 459 59 88 4 13 469 483 28 Pythium splendens calmodulin mRNA, complete cds blastn 44428 492 0.991869918699187 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
19545463 19545463 PRJNA416866_P_NODE_1416_length_590_cov_28.098299_g1277_i0 PRJNA416866 1416 590 28.098299 165.7799641 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 6.83e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g1277 i0 80.533 57.335593220339 375 65 62 4 199 566 441 68 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
21485455 21485455 PRJNA416866_P_NODE_11217_length_203_cov_0.901408_g11073_i0 PRJNA416866 11217 203 0.901408 1.82985824 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 263 7.51e-66   NTclustered gi|299764602|gb|GQ919079.1| 281402 g11073 i0 90.196 96.871921182266 204 17 100 3 1 203 652 853 Saprolegnia australis 28S large subunit ribosomal RNA gene, partial sequence blastn 19665 263 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia australis
22096086 22096086 PRJNA416866_P_NODE_2558_length_427_cov_1.734973_g2415_i0 PRJNA416866 2558 427 1.734973 7.40833471 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 412 1.64e-110   NTclustered gi|695434207|ref|XM_009533074.1| 67593 g2415 i0 85.642 55.5081967213115 397 51 92 6 2 395 394 1 Phytophthora sojae hypothetical protein partial mRNA blastn 23702 412 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;