RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA416866" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA416866 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8072949 8072949 PRJNA416866_P_NODE_10727_length_205_cov_0.888889_g10583_i0 PRJNA416866 10727 205 0.888889 1.82222245 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 174 3.66e-39   NTclustered gi|150982261|gb|EF634719.1| 452809 g10583 i0 88.194 10.2048780487805 144 17 70 0 5 148 160 303 Pristionchus sp. 15 RS5229 large subunit ribosomal protein 30 (rpl-30) mRNA, partial cds blastn 2092 174 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
24646047 24646047 PRJNA416866_P_NODE_8520_length_221_cov_0.950000_g8376_i0 PRJNA416866 8520 221 0.95 2.0995 Trichinella spiralis 6334 Nematoda Nematoda 63.9 9.05e-6   NTclustered gi|109716042|gb|AC187345.2| 6334 g8376 i0 93.182 0.597285067873303 44 1 20 1 12 55 117976 118017 Trichinella spiralis BAC clone TS195-4H12 from chromosome unknown, complete sequence blastn 132 63.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;