RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA416866" and tax_phylum = "Microsporidia"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA416866 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3634606 3634606 PRJNA416866_P_NODE_5283_length_285_cov_1.531250_g5139_i0 PRJNA416866 5283 285 1.53125 4.3640625 Heterosporis 157917 Fungi Fungi 394 3.8e-105   NTclustered gi|448278452|gb|KC137548.1| 1289055 g5139 i0 91.638 37.9052631578947 287 20 100 3 1 285 3171 3455 Heterosporis sp. NBDP-2013a isolate MN/WAE small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10803 394 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Heterosporis Heterosporis sp. NBDP-2013a
4246722 4246722 PRJNA416866_P_NODE_7204_length_241_cov_1.850000_g7060_i0 PRJNA416866 7204 241 1.85 4.4585 Pseudoloma neurophilia 146866 Fungi Fungi 442 1.0999999999999999e-119   NTclustered gi|11993647|gb|AF322654.1| 146866 g7060 i0 99.585 61.9709543568465 241 1 100 0 1 241 1939 1699 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14935 442 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
5523411 5523411 PRJNA416866_P_NODE_745_length_855_cov_2.841310_g624_i0 PRJNA416866 745 855 2.84131 24.2932005 Pseudoloma neurophilia 146866 Fungi Fungi 1576 0   NTclustered gi|11993647|gb|AF322654.1| 146866 g624 i0 99.883 91.3134502923977 855 1 100 0 1 855 468 1322 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 78073 1576 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
8736629 8736629 PRJNA416866_P_NODE_1827_length_510_cov_1.425390_g1685_i0 PRJNA416866 1827 510 1.42539 7.269489 Pleistophoridae 35232 Fungi Fungi 547 5.2199999999999985e-151   NTclustered gi|134147422|gb|EF119339.1| 249366 g1685 i0 86.154 15.2313725490196 520 57 100 15 1 510 2100 2614 Pleistophora mulleri 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 7768 547 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Pleistophora Pleistophora mulleri
20821374 20821374 PRJNA416866_P_NODE_1317_length_613_cov_2.353261_g1178_i0 PRJNA416866 1317 613 2.353261 14.42548993 Pseudoloma neurophilia 146866 Fungi Fungi 809 0   NTclustered gi|11993647|gb|AF322654.1| 146866 g1178 i0 99.773 69.141924959217 440 1 72 0 174 613 2 441 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 42384 809 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;