RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA416866" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA416866 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3634605 3634605 PRJNA416866_P_NODE_5243_length_286_cov_1.706667_g5099_i0 PRJNA416866 5243 286 1.706667 4.88106762 Naegleria 5761 Heterolobosea other_Eukaryota 158 5.4499999999999985e-34   NTclustered gi|2618963742|gb|OR769034.1| 5762 g5099 i0 85.811 40.6398601398601 148 21 52 0 139 286 5050 5197 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 11623 158 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
5523406 5523406 PRJNA416866_P_NODE_6245_length_260_cov_2.241206_g6101_i0 PRJNA416866 6245 260 2.241206 5.8271356 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 193 1.34e-44   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g6101 i0 93.75 47.1307692307692 128 8 49 0 12 139 3979 3852 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12254 193 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
11898513 11898513 PRJNA416866_P_NODE_9350_length_210_cov_1.288591_g9206_i0 PRJNA416866 9350 210 1.288591 2.7060411 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 100 6.49e-17   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g9206 i0 92.754 9.71904761904762 69 5 33 0 116 184 4145 4213 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2041 100 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
19545470 19545470 PRJNA416866_P_NODE_2356_length_446_cov_0.997403_g2213_i0 PRJNA416866 2356 446 0.997403 4.44841738 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 318 3.85e-82   NTclustered gi|2124392890|ref|XM_044712220.1| 5763 g2213 i0 80.471 3.31165919282511 425 76 95 7 17 438 29 449 Naegleria fowleri uncharacterized protein (FDP41_008374), partial mRNA blastn 1477 318 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;