RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA416866" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA416866 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6797401 6797401 PRJNA416866_P_NODE_10046_length_207_cov_0.876712_g9902_i0 PRJNA416866 10046 207 0.876712 1.81479384 Peronella japonica 262331 Echinodermata other_Eukaryota 54.7 0.005   NTclustered gi|606211636|dbj|AB779702.1| 262331 g9902 i0 100 0.140096618357488 29 0 14 0 94 122 1162 1190 Peronella japonica PjHox11/13b mRNA for transcription factor Hox11/13b, complete cds blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Clypeasteroida Laganidae Peronella Peronella japonica
19545501 19545501 PRJNA416866_P_NODE_7616_length_234_cov_2.173410_g7472_i0 PRJNA416866 7616 234 2.17341 5.0857794 Lytechinus pictus 7653 Echinodermata other_Eukaryota 52.8 0.021   NTclustered gi|2707444759|ref|XM_064105764.1| 7653 g7472 i0 100 0.358974358974359 28 0 12 0 94 121 4021 4048 PREDICTED: Lytechinus pictus nuclear protein localization protein 4 homolog (LOC129269441), transcript variant X1, mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;