RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA416866" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA416866 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3634586 3634586 PRJNA416866_P_NODE_10143_length_207_cov_0.876712_g9999_i0 PRJNA416866 10143 207 0.876712 1.81479384 root 1 Root_unresolved Root_unresolved 381 2.0299999999999995e-101   NTclustered gi|909719646|gb|KT185626.1| 5755 g9999 i0 100 57.6183574879227 206 0 99 0 2 207 3749 3954 Acanthamoeba castellanii 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11927 381 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6797411 6797411 PRJNA416866_P_NODE_11886_length_201_cov_0.914286_g11742_i0 PRJNA416866 11886 201 0.914286 1.83771486 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 368 1.53e-97   NTclustered gi|470526273|ref|XM_004356675.1| 1257118 g11742 i0 100 59.18407960199 199 0 99 0 1 199 318 516 Acanthamoeba castellanii str. Neff ribosomal protein L19e, putative (ACA1_174910), partial mRNA blastn 11896 368 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9347710 9347710 PRJNA416866_P_NODE_10028_length_207_cov_0.876712_g9884_i0 PRJNA416866 10028 207 0.876712 1.81479384 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 377 2.63e-100   NTclustered gi|470450828|ref|XM_004340382.1| 1257118 g9884 i0 99.517 76.43961352657 207 1 100 0 1 207 943 737 Acanthamoeba castellanii str. Neff elongation factor 1alpha, somatic form, putative (ACA1_138040), partial mRNA blastn 15823 377 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10623513 10623513 PRJNA416866_P_NODE_11369_length_203_cov_0.901408_g11225_i0 PRJNA416866 11369 203 0.901408 1.82985824 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 161 2.82e-35   NTclustered gi|470457305|ref|XM_004341077.1| 1257118 g11225 i0 93.578 0.812807881773399 109 6 81 1 96 203 296 404 Acanthamoeba castellanii str. Neff mitochondrial carnitineacylcarnitine carrier protein (ACA1_236290), partial mRNA blastn 165 161 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11898484 11898484 PRJNA416866_P_NODE_3990_length_331_cov_1.359259_g3847_i0 PRJNA416866 3990 331 1.359259 4.49914729 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 573 5.379999999999998e-159   NTclustered gi|300078498|gb|GU001160.1| 5755 g3847 i0 97.898 29.809667673716 333 3 100 3 1 331 5377 5707 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9867 573 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14448544 14448544 PRJNA416866_P_NODE_4612_length_306_cov_2.183673_g4468_i0 PRJNA416866 4612 306 2.183673 6.68203938 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 510 3.92e-140   NTclustered gi|300078498|gb|GU001160.1| 5755 g4468 i0 96.753 13.797385620915 308 6 100 4 1 306 6747 7052 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4222 510 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15722318 15722318 PRJNA416866_P_NODE_12093_length_194_cov_2.300752_g11949_i0 PRJNA416866 12093 194 2.300752 4.46345888 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 226 9.319999999999998e-55   NTclustered gi|470515123|ref|XM_004352829.1| 1257118 g11949 i0 100 0.804123711340206 122 0 63 0 73 194 439 318 Acanthamoeba castellanii str. Neff S25 ribosomal protein (ACA1_069370), partial mRNA blastn 156 226 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15722347 15722347 PRJNA416866_P_NODE_6493_length_255_cov_2.489691_g6349_i0 PRJNA416866 6493 255 2.489691 6.34871205 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 418 1.9799999999999998e-112   NTclustered gi|300078498|gb|GU001160.1| 5755 g6349 i0 96.471 25.9372549019608 255 5 100 2 1 255 7805 7555 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6614 418 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18271308 18271308 PRJNA416866_P_NODE_7695_length_233_cov_1.215116_g7551_i0 PRJNA416866 7695 233 1.215116 2.83122028 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 424 3.8399999999999996e-114   NTclustered gi|470467737|ref|XM_004341780.1| 1257118 g7551 i0 99.569 74.8969957081545 232 1 99 0 2 233 645 414 Acanthamoeba castellanii str. Neff elongation factor 1-alpha, putative (ACA1_200430), partial mRNA blastn 17451 424 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22096082 22096082 PRJNA416866_P_NODE_2258_length_456_cov_1.777215_g2115_i0 PRJNA416866 2258 456 1.777215 8.1041004 Vexillifera expectata 1789827 Discosea other_Eukaryota 621 2.69e-173   NTclustered gi|1042160921|dbj|LC102267.1| 1789827 g2115 i0 91.228 99.8421052631579 456 40 100 0 1 456 221 676 Vexillifera expectata gene for actin, partial cds, strain: 4730_cl2 blastn 45528 621 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera expectata
24645995 24645995 PRJNA416866_P_NODE_10580_length_205_cov_0.888889_g10436_i0 PRJNA416866 10580 205 0.888889 1.82222245 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 303 4.48e-78   NTclustered gi|470416173|ref|XM_004336808.1| 1257118 g10436 i0 93.659 1 205 10 100 1 1 205 307 106 Acanthamoeba castellanii str. Neff HMGL family domain containing protein (ACA1_130190), partial mRNA blastn 205 303 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;