RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA416866" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA416866 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18271286 18271286 PRJNA416866_P_NODE_2915_length_396_cov_2.202985_g2772_i0 PRJNA416866 2915 396 2.202985 8.7238206 Eunicella cavolini 317547 Cnidaria other_Eukaryota 207 7.64e-49   NTclustered gi|2918369552|emb|OZ237724.1| 317547 g2772 i0 82.627 5.01010101010101 236 39 59 2 38 272 197853 198087 Eunicella cavolini genome assembly, chromosome: 8 blastn 1984 207 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Malacalcyonacea Eunicellidae Eunicella Eunicella cavolini
20821381 20821381 PRJNA416866_P_NODE_2177_length_465_cov_1.500000_g2034_i0 PRJNA416866 2177 465 1.5 6.975 Rhopilema esculentum 499914 Cnidaria other_Eukaryota 97.1 2.06e-15   NTclustered gi|2729058829|ref|XR_010517322.1| 499914 g2034 i0 93.846 15.5096774193548 65 3 14 1 1 65 3607 3544 PREDICTED: Rhopilema esculentum large subunit ribosomal RNA (LOC135695981), rRNA blastn 7212 97.1 1 Eukaryota Opisthokonta Metazoa Cnidaria Scyphozoa Rhizostomeae Rhizostomatidae Rhopilema Rhopilema esculentum
23371784 23371784 PRJNA416866_P_NODE_6319_length_259_cov_1.292929_g6175_i0 PRJNA416866 6319 259 1.292929 3.34868611 Clytia hemisphaerica 252671 Cnidaria other_Eukaryota 148 2.9199999999999998e-31   NTclustered gi|2782908311|ref|XM_067070165.1| 252671 g6175 i0 78.543 10.2046332046332 247 38 94 13 5 248 420 654 PREDICTED: Clytia hemisphaerica small ribosomal subunit protein RACK1 (LOC136813665), mRNA blastn 2643 148 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Leptothecata Clytiidae Clytia Clytia hemisphaerica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;