RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA416866" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA416866 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9347748 9347748 PRJNA416866_P_NODE_7268_length_240_cov_1.430168_g7124_i0 PRJNA416866 7268 240 1.430168 3.4324032 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 261 3.2900000000000007e-65   NTclustered gi|669202240|ref|XM_008627895.1| 54757 g7124 i0 87.124 8.74166666666667 233 26 96 2 10 240 860 630 Plasmodium vinckei vinckei 26S protease regulatory subunit 6B, putative (PVVCY_0701540), partial mRNA blastn 2098 261 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei
18271303 18271303 PRJNA416866_P_NODE_6995_length_245_cov_2.673913_g6851_i0 PRJNA416866 6995 245 2.673913 6.55108685 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 159 1.27e-34   NTclustered gi|669198058|ref|XM_008625818.1| 54757 g6851 i0 86.713 6.33061224489796 143 19 58 0 3 145 509 367 Plasmodium vinckei vinckei eukaryotic translation initiation factor 2 subunit gamma, putative (PVVCY_1003730), partial mRNA blastn 1551 159 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;