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contig_metadata

19 rows where analysis = "blastn", bioproject = "PRJNA416866" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 19 ✖

bioproject 1

  • PRJNA416866 · 19 ✖

analysis 1

  • blastn · 19 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3634586 3634586 PRJNA416866_P_NODE_10143_length_207_cov_0.876712_g9999_i0 PRJNA416866 10143 207 0.876712 1.81479384 root 1 Root_unresolved Root_unresolved 381 2.0299999999999995e-101   NTclustered gi|909719646|gb|KT185626.1| 5755 g9999 i0 100 57.6183574879227 206 0 99 0 2 207 3749 3954 Acanthamoeba castellanii 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11927 381 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6186815 6186815 PRJNA416866_P_NODE_8345_length_223_cov_1.975309_g8201_i0 PRJNA416866 8345 223 1.975309 4.40493907 Chaos 160821 Tubulinea other_Eukaryota 353 4.849999999999999e-93   NTclustered gi|17902587|emb|AJ314606.1| 160822 g8201 i0 95.872 96.7443946188341 218 9 98 0 6 223 1132 1349 Chaos nobile partial 16S rRNA gene, strain CCAP 1511/2 blastn 21574 353 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos nobile
6797411 6797411 PRJNA416866_P_NODE_11886_length_201_cov_0.914286_g11742_i0 PRJNA416866 11886 201 0.914286 1.83771486 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 368 1.53e-97   NTclustered gi|470526273|ref|XM_004356675.1| 1257118 g11742 i0 100 59.18407960199 199 0 99 0 1 199 318 516 Acanthamoeba castellanii str. Neff ribosomal protein L19e, putative (ACA1_174910), partial mRNA blastn 11896 368 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9347710 9347710 PRJNA416866_P_NODE_10028_length_207_cov_0.876712_g9884_i0 PRJNA416866 10028 207 0.876712 1.81479384 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 377 2.63e-100   NTclustered gi|470450828|ref|XM_004340382.1| 1257118 g9884 i0 99.517 76.43961352657 207 1 100 0 1 207 943 737 Acanthamoeba castellanii str. Neff elongation factor 1alpha, somatic form, putative (ACA1_138040), partial mRNA blastn 15823 377 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10623513 10623513 PRJNA416866_P_NODE_11369_length_203_cov_0.901408_g11225_i0 PRJNA416866 11369 203 0.901408 1.82985824 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 161 2.82e-35   NTclustered gi|470457305|ref|XM_004341077.1| 1257118 g11225 i0 93.578 0.812807881773399 109 6 81 1 96 203 296 404 Acanthamoeba castellanii str. Neff mitochondrial carnitineacylcarnitine carrier protein (ACA1_236290), partial mRNA blastn 165 161 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10623527 10623527 PRJNA416866_P_NODE_309_length_1277_cov_2.953125_g242_i0 PRJNA416866 309 1277 2.953125 37.71140625 Copromyxa protea 931554 Tubulinea other_Eukaryota 1044 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g242 i0 81.62 2.85356303837118 1284 215 99 19 9 1277 1293 16 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 3644 1044 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
11898484 11898484 PRJNA416866_P_NODE_3990_length_331_cov_1.359259_g3847_i0 PRJNA416866 3990 331 1.359259 4.49914729 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 573 5.379999999999998e-159   NTclustered gi|300078498|gb|GU001160.1| 5755 g3847 i0 97.898 29.809667673716 333 3 100 3 1 331 5377 5707 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9867 573 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14448543 14448543 PRJNA416866_P_NODE_432_length_1120_cov_2.827195_g242_i1 PRJNA416866 432 1120 2.827195 31.664584 Copromyxa protea 931554 Tubulinea other_Eukaryota 885 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g242 i1 81.041 2.97678571428571 1134 196 100 17 1 1120 16 1144 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 3334 885 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
14448544 14448544 PRJNA416866_P_NODE_4612_length_306_cov_2.183673_g4468_i0 PRJNA416866 4612 306 2.183673 6.68203938 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 510 3.92e-140   NTclustered gi|300078498|gb|GU001160.1| 5755 g4468 i0 96.753 13.797385620915 308 6 100 4 1 306 6747 7052 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4222 510 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14448551 14448551 PRJNA416866_P_NODE_8212_length_225_cov_1.560976_g8068_i0 PRJNA416866 8212 225 1.560976 3.512196 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 202 1.88e-47   NTclustered gi|511487963|gb|JX898537.1| 1260765 g8068 i0 85.354 10.2044444444444 198 26 88 3 1 198 301 107 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 2296 202 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
15722318 15722318 PRJNA416866_P_NODE_12093_length_194_cov_2.300752_g11949_i0 PRJNA416866 12093 194 2.300752 4.46345888 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 226 9.319999999999998e-55   NTclustered gi|470515123|ref|XM_004352829.1| 1257118 g11949 i0 100 0.804123711340206 122 0 63 0 73 194 439 318 Acanthamoeba castellanii str. Neff S25 ribosomal protein (ACA1_069370), partial mRNA blastn 156 226 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15722347 15722347 PRJNA416866_P_NODE_6493_length_255_cov_2.489691_g6349_i0 PRJNA416866 6493 255 2.489691 6.34871205 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 418 1.9799999999999998e-112   NTclustered gi|300078498|gb|GU001160.1| 5755 g6349 i0 96.471 25.9372549019608 255 5 100 2 1 255 7805 7555 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6614 418 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17661263 17661263 PRJNA416866_P_NODE_2794_length_405_cov_1.770349_g2651_i0 PRJNA416866 2794 405 1.770349 7.16991345 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 58.4 8.35e-4   NTclustered gi|330791506|ref|XM_003283786.1| 5786 g2651 i0 92.5 1.22222222222222 40 3 10 0 352 391 6288 6327 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_45096), partial mRNA blastn 495 58.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
18271308 18271308 PRJNA416866_P_NODE_7695_length_233_cov_1.215116_g7551_i0 PRJNA416866 7695 233 1.215116 2.83122028 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 424 3.8399999999999996e-114   NTclustered gi|470467737|ref|XM_004341780.1| 1257118 g7551 i0 99.569 74.8969957081545 232 1 99 0 2 233 645 414 Acanthamoeba castellanii str. Neff elongation factor 1-alpha, putative (ACA1_200430), partial mRNA blastn 17451 424 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18271319 18271319 PRJNA416866_P_NODE_9775_length_208_cov_0.870748_g9631_i0 PRJNA416866 9775 208 0.870748 1.81115584 Dictyostelium purpureum 5786 Evosea other_Eukaryota 180 8.01e-41   NTclustered gi|330805726|ref|XM_003290782.1| 5786 g9631 i0 82.915 39.0625 199 34 96 0 2 200 939 741 Dictyostelium purpureum cell division cycle protein 48 (DICPUDRAFT_81538), partial mRNA blastn 8125 180 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
18935216 18935216 PRJNA416866_P_NODE_2955_length_393_cov_1.418675_g2812_i0 PRJNA416866 2955 393 1.418675 5.57539275 Chaos 160821 Tubulinea other_Eukaryota 207 7.58e-49   NTclustered gi|17902587|emb|AJ314606.1| 160822 g2812 i0 87.778 17.2315521628499 180 18 58 4 217 393 942 1120 Chaos nobile partial 16S rRNA gene, strain CCAP 1511/2 blastn 6772 207 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos nobile
20821369 20821369 PRJNA416866_P_NODE_11057_length_204_cov_0.895105_g10913_i0 PRJNA416866 11057 204 0.895105 1.8260142 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 235 1.65e-57   NTclustered gi|145386791|gb|EF216916.1| 136459 g10913 i0 89.785 80.0343137254902 186 16 90 3 5 188 1327 1511 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 16327 235 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
22096082 22096082 PRJNA416866_P_NODE_2258_length_456_cov_1.777215_g2115_i0 PRJNA416866 2258 456 1.777215 8.1041004 Vexillifera expectata 1789827 Discosea other_Eukaryota 621 2.69e-173   NTclustered gi|1042160921|dbj|LC102267.1| 1789827 g2115 i0 91.228 99.8421052631579 456 40 100 0 1 456 221 676 Vexillifera expectata gene for actin, partial cds, strain: 4730_cl2 blastn 45528 621 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera expectata
24645995 24645995 PRJNA416866_P_NODE_10580_length_205_cov_0.888889_g10436_i0 PRJNA416866 10580 205 0.888889 1.82222245 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 303 4.48e-78   NTclustered gi|470416173|ref|XM_004336808.1| 1257118 g10436 i0 93.659 1 205 10 100 1 1 205 307 106 Acanthamoeba castellanii str. Neff HMGL family domain containing protein (ACA1_130190), partial mRNA blastn 205 303 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;