RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA415856" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA415856 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
419270 419270 PRJNA415856_P_NODE_28161_length_177_cov_1.992188_g27900_i0 PRJNA415856 28161 177 1.992188 3.52617276 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 233 4.9799999999999995e-57   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g27900 i0 98.485 83.4237288135593 132 2 75 0 1 132 3556144 3556275 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 14766 233 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
2359086 2359086 PRJNA415856_P_NODE_8382_length_314_cov_3.418868_g8121_i0 PRJNA415856 8382 314 3.418868 10.73524552 Chthoniobacter 295577 Bacteria Bacteria 375 1.5299999999999998e-99   NTclustered gi|226525288|gb|FJ872373.1| 156588 g8121 i0 89.369 261.684713375796 301 28 95 4 1 299 17769 17471 Uncultured Verrucomicrobia bacterium clone 118 genomic sequence blastn 82169 375 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
2970089 2970089 PRJNA415856_P_NODE_38583_length_166_cov_0.871795_g38322_i0 PRJNA415856 38583 166 0.871795 1.4471797 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 176 7.91e-40   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g38322 i0 90.84 8.19277108433735 131 12 79 0 36 166 4369754 4369884 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 1360 176 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
9347482 9347482 PRJNA415856_P_NODE_40268_length_165_cov_1.224138_g40007_i0 PRJNA415856 40268 165 1.224138 2.0198277 Nibricoccus aquaticus 2576891 Bacteria Bacteria 294 2.08e-75   NTclustered gi|1243404978|gb|CP023344.1| 2576891 g40007 i0 98.788 18.9090909090909 165 2 100 0 1 165 2497234 2497070 Nibricoccus aquaticus strain HZ-65 chromosome, complete genome blastn 3120 294 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Nibricoccus Nibricoccus aquaticus
22095611 22095611 PRJNA415856_P_NODE_16778_length_212_cov_4.042945_g16517_i0 PRJNA415856 16778 212 4.042945 8.5710434 Candidatus Methylacidiphilum infernorum 511746 Bacteria Bacteria 193 1.05e-44   NTclustered gi|1999105499|gb|CP065956.1| 511746 g16517 i0 83.81 105.943396226415 210 27 98 7 6 212 2044615 2044410 Candidatus Methylacidiphilum infernorum strain IT5 chromosome, complete genome blastn 22460 193 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Methylacidiphilae Methylacidiphilales Methylacidiphilaceae Methylacidiphilum (ex Ratnadevi et al. 2023) Candidatus Methylacidiphilum infernorum
24645872 24645872 PRJNA415856_P_NODE_560_length_1211_cov_2.354561_g463_i0 PRJNA415856 560 1211 2.354561 28.51373371 Chthoniobacter flavus 191863 Bacteria Bacteria 1576 0   NTclustered gi|183579828|emb|AM905425.1| 497964 g463 i0 90.19 204.23534269199 1213 113 100 6 1 1211 1424 216 Chthoniobacter flavus 23S rRNA gene, strain Ellin428 blastn 247329 1576 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter flavus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;