RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA415856" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA415856 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9347396 9347396 PRJNA415856_P_NODE_28228_length_177_cov_1.593750_g27967_i0 PRJNA415856 28228 177 1.59375 2.8209375 Schistosoma haematobium 6185 Platyhelminthes Platyhelminthes 56.5 0.001   NTclustered gi|2318759204|ref|XM_051218557.1| 6185 g27967 i0 94.444 0.203389830508475 36 2 20 0 91 126 1402 1367 Schistosoma haematobium collagen, type IV, alpha (COL4A1_3), partial mRNA blastn 36 56.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma haematobium
20821168 20821168 PRJNA415856_P_NODE_47837_length_162_cov_40.530973_g47576_i0 PRJNA415856 47837 162 40.530973 65.66017626 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 294 2.03e-75   NTclustered gi|56757963|gb|AY815390.1| 6182 g47576 i0 99.387 126.049382716049 163 0 100 1 1 162 1456 1294 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 20420 294 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;