RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA415856" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA415856 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4246418 4246418 PRJNA415856_P_NODE_38384_length_166_cov_0.871795_g38123_i0 PRJNA415856 38384 166 0.871795 1.4471797 Strongyloides ratti 34506 Nematoda Nematoda 97.1 6.33e-16   NTclustered gi|1376144623|ref|XM_024652778.1| 34506 g38123 i0 83.962 0.63855421686747 106 11 62 5 20 122 640 538 Strongyloides ratti INO80 complex subunit E (SRAE_2000178600), partial mRNA blastn 106 97.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
4911611 4911611 PRJNA415856_P_NODE_54724_length_154_cov_3.314286_g54463_i0 PRJNA415856 54724 154 3.314286 5.10400044 Metazoa 33208 Nematoda Nematoda 134 4.39e-27   NTclustered gi|1376157049|ref|XM_024645950.1| 34506 g54463 i0 86.29 34 124 16 81 1 3 126 765 643 Strongyloides ratti Myosin heavy chain (SRAE_0000010500), partial mRNA blastn 5236 135 0.992592592592593 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
6796987 6796987 PRJNA415856_P_NODE_22486_length_188_cov_1.460432_g22225_i0 PRJNA415856 22486 188 1.460432 2.74561216 Strongyloides ratti 34506 Nematoda Nematoda 52.8 0.016   NTclustered gi|1376154095|ref|XM_024646641.1| 34506 g22225 i0 96.774 0.164893617021277 31 1 16 0 128 158 167 197 Strongyloides ratti Zona pellucida domain-containing protein (SRAE_X000123300), partial mRNA blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
24035327 24035327 PRJNA415856_P_NODE_50999_length_161_cov_1.821429_g50738_i0 PRJNA415856 50999 161 1.821429 2.93250069 Metazoa 33208 Nematoda Nematoda 122 1.0099999999999999e-23   NTclustered gi|11095068|gb|AC084619.1|CBRG44K07 6238 g50738 i0 80.503 2.94409937888199 159 31 99 0 3 161 6484 6642 Caenorhabditis briggsae cosmid G44K07, complete sequence blastn 474 122 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;