RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA415856" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA415856 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1694277 1694277 PRJNA415856_P_NODE_50462_length_162_cov_0.902655_g50201_i0 PRJNA415856 50462 162 0.902655 1.4623011 Octopus bimaculoides 37653 Mollusca Mollusca 115 1.7e-21   NTclustered gi|2427275127|ref|XM_014914820.2| 37653 g50201 i0 81.884 4.37037037037037 138 23 85 2 9 145 1224 1088 PREDICTED: Octopus bimaculoides ubiquitin carboxyl-terminal hydrolase 15 (LOC106869189), transcript variant X1, mRNA blastn 708 115 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Octopoda Octopodidae Octopus Octopus bimaculoides
5523076 5523076 PRJNA415856_P_NODE_3425_length_537_cov_2.075820_g3177_i0 PRJNA415856 3425 537 2.07582 11.1471534 Patella vulgata 6465 Mollusca Mollusca 60.2 3.15e-4   NTclustered gi|2506333682|ref|XM_050552704.2| 6465 g3177 i0 100 1.91620111731844 32 0 6 0 397 428 2796 2765 PREDICTED: Patella vulgata importin-7 (LOC126823734), mRNA blastn 1029 60.2 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella vulgata
6186621 6186621 PRJNA415856_P_NODE_50905_length_161_cov_1.821429_g50644_i0 PRJNA415856 50905 161 1.821429 2.93250069 Cyclophorus 75122 Mollusca Mollusca 71.3 3.69e-8   NTclustered gi|2251842947|dbj|LC658828.1| 494922 g50644 i0 85.333 46.0124223602485 75 4 44 7 82 152 506 435 Cyclophorus formosaensis KC8691 mitochondrial gene for 16S rRNA, partial sequence blastn 7408 71.3 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Architaenioglossa Cyclophoridae Cyclophorus Cyclophorus formosaensis
9347262 9347262 PRJNA415856_P_NODE_10588_length_272_cov_1.950673_g10327_i0 PRJNA415856 10588 272 1.950673 5.30583056 Haliotis asinina 109174 Mollusca Mollusca 56.5 0.002   NTclustered gi|2793372023|ref|XM_067797346.1| 109174 g10327 i0 96.97 0.121323529411765 33 1 12 0 74 106 917 949 PREDICTED: Haliotis asinina mucin-22-like (LOC137259746), partial mRNA blastn 33 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis asinina
14448164 14448164 PRJNA415856_P_NODE_27452_length_179_cov_1.030769_g27191_i0 PRJNA415856 27452 179 1.030769 1.84507651 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.015   NTclustered gi|2913001038|dbj|AP039608.1| 145626 g27191 i0 100 0.156424581005587 28 0 16 0 8 35 32885172 32885145 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 27, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
15721833 15721833 PRJNA415856_P_NODE_13933_length_232_cov_2.131148_g13672_i0 PRJNA415856 13933 232 2.131148 4.94426336 Mytilus edulis 6550 Mollusca Mollusca 52.8 0.021   NTclustered gi|2912321271|ref|XM_071270946.1| 6550 g13672 i0 100 0.241379310344828 28 0 12 0 13 40 8013 7986 PREDICTED: Mytilus edulis potassium voltage-gated channel protein Shaw-like (LOC139486159), transcript variant X2, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;