RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA415856" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA415856 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
419171 419171 PRJNA415856_P_NODE_15801_length_219_cov_1.058824_g15540_i0 PRJNA415856 15801 219 1.058824 2.31882456 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 272 1.37e-68   NTclustered gi|2874253728|emb|OY969570.1| 412054 g15540 i0 89.189 44.7716894977169 222 18 100 5 1 219 172720 172502 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 9805 272 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
9347307 9347307 PRJNA415856_P_NODE_15628_length_220_cov_1.192982_g15367_i0 PRJNA415856 15628 220 1.192982 2.6245604 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 311 2.91e-80   NTclustered gi|2874253978|emb|OY970303.1| 412054 g15367 i0 93.056 296.3 216 9 97 6 8 220 5915218 5915430 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 65186 311 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
15721886 15721886 PRJNA415856_P_NODE_19953_length_196_cov_1.027211_g19692_i0 PRJNA415856 19953 196 1.027211 2.01333356 uncultured Gemmatimonadales bacterium HF4000_15H13 723618 Bacteria Bacteria 171 4.49e-38   NTclustered gi|297172678|gb|GU568020.1| 723618 g19692 i0 90.769 169.061224489796 130 8 65 4 68 195 19354 19227 Uncultured Gemmatimonadales bacterium HF4000_15H13 genomic sequence blastn 33136 171 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium HF4000_15H13
24645600 24645600 PRJNA415856_P_NODE_18360_length_203_cov_2.597403_g18099_i0 PRJNA415856 18360 203 2.597403 5.27272809 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 278 2.68e-70   NTclustered gi|2107953857|gb|CP070792.1| 2026742 g18099 i0 91.584 192.369458128079 202 16 99 1 2 203 1095565 1095365 MAG: Gemmatimonadetes bacterium isolate bin1440 chromosome blastn 39051 278 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
24645785 24645785 PRJNA415856_P_NODE_43620_length_164_cov_0.886957_g43359_i0 PRJNA415856 43620 164 0.886957 1.45460948 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 163 6.06e-36   NTclustered gi|2874253978|emb|OY970303.1| 412054 g43359 i0 87.77 0.847560975609756 139 17 85 0 6 144 2193385 2193523 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 139 163 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;