RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA415856" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA415856 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13836897 13836897 PRJNA415856_P_NODE_25771_length_182_cov_1.285714_g25510_i0 PRJNA415856 25771 182 1.285714 2.33999948 Pseudobdellovibrio 2862745 Bacteria Bacteria 315 1.79e-81   NTclustered gi|507148233|ref|NR_103040.1| 453816 g25510 i0 97.802 229.071428571429 182 4 100 0 1 182 2093 2274 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 41691 315 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
18270988 18270988 PRJNA415856_P_NODE_39815_length_165_cov_1.758621_g39554_i0 PRJNA415856 39815 165 1.758621 2.90172465 uncultured Bdellovibrio sp. 239744 Bacteria Bacteria 305 9.59e-79   NTclustered gi|758818755|emb|HF912306.1| 239744 g39554 i0 100 113.993939393939 165 0 100 0 1 165 515 351 Uncultured Bdellovibrio sp. partial 16S rRNA gene, clone AcqueII_11 blastn 18809 305 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio uncultured Bdellovibrio sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;