RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA415856" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA415856 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11898289 11898289 PRJNA415856_P_NODE_52050_length_161_cov_0.910714_g51789_i0 PRJNA415856 52050 161 0.910714 1.46624954 Cavenderia fasciculata 261658 Evosea other_Eukaryota 67.6 4.78e-7   NTclustered gi|470251839|ref|XM_004358960.1| 261658 g51789 i0 100 32.2422360248447 36 0 22 0 1 36 540 505 Cavenderia fasciculata uncharacterized protein (DFA_01042), partial mRNA blastn 5191 67.6 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
23371594 23371594 PRJNA415856_P_NODE_53539_length_161_cov_0.875000_g53278_i0 PRJNA415856 53539 161 0.875 1.40875 Didymium iridis 5793 Evosea other_Eukaryota 261 2.04e-65   NTclustered gi|2687|emb|X60210.1| 5793 g53278 i0 99.306 16.3416149068323 144 1 89 0 18 161 1516 1373 D.iridis LSU rRNA gene blastn 2631 261 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
25309548 25309548 PRJNA415856_P_NODE_21760_length_189_cov_2.150000_g21499_i0 PRJNA415856 21760 189 2.15 4.0635 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 174 3.32e-39   NTclustered gi|470240647|ref|XM_004354263.1| 261658 g21499 i0 83.511 111.878306878307 188 29 99 2 3 189 424 610 Cavenderia fasciculata ubiquitin (ubqA), partial mRNA blastn 21145 174 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;