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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA415636" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 14 ✖

bioproject 1

  • PRJNA415636 · 14 ✖

analysis 1

  • blastn · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
419108 419108 PRJNA415636_S_NODE_3961_length_250_cov_1.256158_g3914_i0 PRJNA415636 3961 250 1.256158 3.140395 Oryza sativa 4530 Plants Plants 377 3.29e-100   NTclustered gi|347661380|gb|BT131733.1| 39947 g3914 i0 93.976 0.996 249 15 99 0 1 249 275 523 Oryza sativa clone RRlibD00354 mRNA sequence blastn 249 377 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
1693936 1693936 PRJNA415636_S_NODE_2202_length_312_cov_6.000000_g2155_i0 PRJNA415636 2202 312 6 18.72 Calluna vulgaris 13385 Plants Plants 58.4 6.27e-4   NTclustered gi|2917555290|emb|OZ228607.1| 13385 g2155 i0 94.595 1.06089743589744 37 2 12 0 32 68 61123213 61123249 Calluna vulgaris genome assembly, chromosome: 4 blastn 331 58.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Ericaceae Calluna Calluna vulgaris
8072406 8072406 PRJNA415636_S_NODE_2467_length_299_cov_1.821429_g2420_i0 PRJNA415636 2467 299 1.821429 5.44607271 Oryza sativa 4530 Plants Plants 364 3.1399999999999986e-96   NTclustered gi|32994248|dbj|AK109039.1| 39947 g2420 i0 90.842 0.91304347826087 273 23 91 2 2 273 562 833 Oryza sativa Japonica Group cDNA clone:002-154-C12, full insert sequence blastn 273 364 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
10622993 10622993 PRJNA415636_S_NODE_3909_length_251_cov_2.166667_g3862_i0 PRJNA415636 3909 251 2.166667 5.43833417 Eucalyptus grandis 71139 Plants Plants 195 3.57e-45   NTclustered gi|1973646297|ref|XM_039308465.1| 71139 g3862 i0 88.344 24.2988047808765 163 17 65 2 17 178 306 145 PREDICTED: Eucalyptus grandis 40S ribosomal protein S30 (LOC120291292), mRNA blastn 6099 195 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Myrtales Myrtaceae Eucalyptus Eucalyptus grandis
11897954 11897954 PRJNA415636_S_NODE_3490_length_262_cov_2.032558_g3443_i0 PRJNA415636 3490 262 2.032558 5.32530196 Corylus avellana 13451 Plants Plants 333 7.619999999999999e-87   NTclustered gi|2578518154|ref|XM_059595289.1| 13451 g3443 i0 94.444 8.68702290076336 216 12 82 0 1 216 178 393 PREDICTED: Corylus avellana uncharacterized LOC132182083 (LOC132182083), mRNA blastn 2276 333 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Betulaceae Corylus Corylus avellana
14447997 14447997 PRJNA415636_S_NODE_2252_length_309_cov_8.179389_g2205_i0 PRJNA415636 2252 309 8.179389 25.27431201 Calluna vulgaris 13385 Plants Plants 56.5 0.002   NTclustered gi|2917566876|emb|OZ228610.1| 13385 g2205 i0 97.059 0.653721682847896 34 0 11 1 136 168 49713335 49713368 Calluna vulgaris genome assembly, chromosome: 7 blastn 202 56.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Ericaceae Calluna Calluna vulgaris
14448000 14448000 PRJNA415636_S_NODE_3432_length_264_cov_1.935484_g3385_i0 PRJNA415636 3432 264 1.935484 5.10967776 Oryza sativa 4530 Plants Plants 340 4.5999999999999996e-89   NTclustered gi|32994134|dbj|AK108925.1| 39947 g3385 i0 90.189 1.00378787878788 265 21 100 3 1 264 1044 784 Oryza sativa Japonica Group cDNA clone:002-152-H12, full insert sequence blastn 265 340 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
14448002 14448002 PRJNA415636_S_NODE_4072_length_247_cov_1.785000_g4025_i0 PRJNA415636 4072 247 1.785 4.40895 Oryza sativa 4530 Plants Plants 228 3.4599999999999984e-55   NTclustered gi|37989474|dbj|AK119851.1| 39947 g4025 i0 92.216 0.821862348178138 167 4 78 8 1 158 2484 2650 Oryza sativa Japonica Group cDNA clone:002-178-F09, full insert sequence blastn 203 228 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
15721777 15721777 PRJNA415636_S_NODE_253_length_639_cov_4.206081_g223_i0 PRJNA415636 253 639 4.206081 26.87685759 Vitis vinifera 29760 Plants Plants 54.7 0.018   NTclustered gi|147811573|emb|AM450020.2| 29760 g223 i0 100 0.100156494522692 29 0 5 0 18 46 13984 13956 Vitis vinifera contig VV78X043765.9, whole genome shotgun sequence blastn 64 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Vitales Vitaceae Vitis Vitis vinifera
15721785 15721785 PRJNA415636_S_NODE_6953_length_193_cov_11.226027_g6906_i0 PRJNA415636 6953 193 11.226027 21.66623211 Picea abies 3329 Plants Plants 52.8 0.017   NTclustered gi|2835530393|dbj|LC777203.1| 3329 g6906 i0 100 0.145077720207254 28 0 15 0 166 193 59 32 Picea abies Pa-Kumamoto-2022 PaMurJ mRNA for lipid II transferase, complete cds blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
20820831 20820831 PRJNA415636_S_NODE_3717_length_256_cov_0.971292_g3670_i0 PRJNA415636 3717 256 0.971292 2.48650752 Phyllostachys edulis 38705 Plants Plants 468 1.95e-127   NTclustered gi|242382032|emb|FP097018.1| 38705 g3670 i0 99.609 1 256 1 100 0 1 256 645 900 Phyllostachys edulis cDNA clone: bphyem112p22, full insert sequence blastn 256 468 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Phyllostachys Phyllostachys edulis
23371223 23371223 PRJNA415636_S_NODE_2639_length_292_cov_1.534694_g2592_i0 PRJNA415636 2639 292 1.534694 4.48130648 Vitis vinifera 29760 Plants Plants 52.8 0.027   NTclustered gi|147777539|emb|AM432656.2| 29760 g2592 i0 96.774 0.106164383561644 31 1 11 0 77 107 616 586 Vitis vinifera contig VV78X053000.2, whole genome shotgun sequence blastn 31 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Vitales Vitaceae Vitis Vitis vinifera
23371228 23371228 PRJNA415636_S_NODE_6819_length_197_cov_2.040000_g6772_i0 PRJNA415636 6819 197 2.04 4.0188 Triticum aestivum 4565 Plants Plants 91.6 3.62e-14   NTclustered gi|2123604979|ref|XM_044565676.1| 4565 g6772 i0 86.585 8.43654822335025 82 11 42 0 116 197 476 395 PREDICTED: Triticum aestivum 60S ribosomal protein L18a-like (LOC123146086), mRNA blastn 1662 91.6 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
25309417 25309417 PRJNA415636_S_NODE_1760_length_338_cov_1.261168_g1713_i0 PRJNA415636 1760 338 1.261168 4.26274784 Poaceae 4479 Plants Plants 619 6.969999999999999e-173   NTclustered gi|2307846209|gb|OM049555.1| 4545 g1713 i0 99.704 100 338 1 100 0 1 338 503 166 Poa pratensis voucher Po_p_1 chloroplast, complete genome blastn 33800 619 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Poa Poa pratensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;