RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA415636" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA415636 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1693938 1693938 PRJNA415636_S_NODE_3342_length_267_cov_1.286364_g3295_i0 PRJNA415636 3342 267 1.286364 3.43459188 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 287 6.15e-73   NTclustered gi|2031944901|emb|OD958399.1| 5763 g3295 i0 86.09 52.6479400749064 266 37 99 0 2 267 7335 7600 Naegleria fowleri Karachi_NF001 strain blastn 14057 287 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
5522885 5522885 PRJNA415636_S_NODE_365_length_567_cov_2.544231_g324_i0 PRJNA415636 365 567 2.544231 14.42578977 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 959 0   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g324 i0 97.178 22.8853615520282 567 16 100 0 1 567 3729 4295 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12976 959 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
17660802 17660802 PRJNA415636_S_NODE_3534_length_261_cov_1.981308_g3487_i0 PRJNA415636 3534 261 1.981308 5.17121388 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 483 7.12e-132   NTclustered gi|399764158|gb|JQ271669.1| 1217110 g3487 i0 100 25.9885057471264 261 0 100 0 1 261 512 252 Allovahlkampfia sp. PKD 2011a strain PS1073J 18S ribosomal RNA gene, partial sequence blastn 6783 483 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
20820830 20820830 PRJNA415636_S_NODE_1737_length_339_cov_6.890411_g1690_i0 PRJNA415636 1737 339 6.890411 23.35849329 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 211 4.99e-50   NTclustered gi|2124402788|ref|XM_044685796.1| 51637 g1690 i0 79.734 2.52212389380531 301 53 88 7 1 297 219 515 Naegleria lovaniensis uncharacterized protein (C9374_010270), partial mRNA blastn 855 211 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;